DHV-1 seqs

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DHV-1 seqs
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DHV-2 & 3

Genera
Enterovirus
Cardiovirus
Aphthovirus
Hepatovirus
Parechovirus
Erbovirus
Kobuvirus
Teschovirus
"Sapelovirus"
"Senecavirus"
"Tremovirus"
Unassigned
  Genus: Unassigned (proposed "Avihepatovirus")

Species: Unassigned (proposed "Duck hepatitis A virus")

Serotype: duck hepatitis virus 1 (DHV-1)
Proposed name: duck hepatitis A virus 1
                      (DHAV-1)		  
5' UTR VP0 VP3 VP1 2A1 2A2 2A3 2B 2C 3A 3B 3C 3D 3' UTR
    (DHV-1 may contain 1, 2 or 3 2A genes)

(White areas indicate genes which haven't yet been sequenced completely; grey areas are where only partial sequences exist)

Virus Strain Region Length* Accession No. Reference Comments

Duck hepatitis virus 1 (DHV-1)
Proposed name: Duck hepatitis A virus 1 (DHAV-1)
DHV-1 03D CG 7687 DQ249299 Tseng et al., 2007 Taiwan; 2-3 U's missing from 5' end
DHV-1 H CG 7664 DQ249300 Tseng et al., 2007 UK; 20-21 nt missing from 5' end
DHV-1 5886 CG 7672 DQ249301 Tseng et al., 2007 USA; 16-17 nt missing from 5' end
DHV-1 R85952 CG 7690 DQ226541 Kim et al., 2006 ATCC VR-191
DHV-1 DRL-62 CG 7691 DQ219396 Kim et al., 2006 ATCC VR-1313
DHV-1 C80 CG 7689 DQ864514 Ding and Zhang, 2007 China
DHV-1v E63 3D(p)+3'UTR 1228 DQ864515 Ding and Zhang, unpublished China
DHV-1 A66 CG 7703 DQ886445 Zhang et al., unpublished (a) China; serial passage in chicken embryos
DHV-1 JX CG 7582 EF093502 Zhang et al., unpublished (b) China:Jiangxia; nts missing from 5' and 3' terminii
DHV-1 JX CG 7690 EU371557 Feng et al., unpublished. China
DHV-1 Sichuan 3D(p) 440 EF064886 Xin et al., unpublished China
DHV-1 S CG 7696 EF417871 Feng et al., unpublished China: Beijing, ShunYi area
DHV-1 XJ CG 7712 EF382778 Liu et al., unpublished (a) southeast China; BHK-21 passaged virus
DHV-1 SY1 VP1 714 EF407857 Liu et al., unpublished (b)  
DHV-1 SY2 VP1 714 EF407858 Liu et al., unpublished (b)  
DHV-1 SY3 VP1 714 EF407859 Liu et al., unpublished (b)  
DHV-1 SY4 VP1 714 EF407860 Liu et al., unpublished (b)  
DHV-1 SY5 VP1 714 EF407861 Liu et al., unpublished (b)  
DHV-1 SY6 VP1 714 EF407862 Liu et al., unpublished (b)  
DHV-1 ZJ-A VP1 714 EF442072 Liu et al., unpublished (b) southeast China; vaccine strain; modified live virus
DHV-1 AV2111 VP1 714 EF442073 Liu et al., unpublished (b) virulent strain
DHV-1 HP-1 CG 7665 EF151312 Zhang and Guo, unpublished  
DHV-1 E53 CG 7662 EF151313 Zhang and Guo, unpublished  
DHV-1 R 3D 1147 EF515838 Luo et al., unpublished (a) China
CG 7703 EF585200 Luo et al., unpublished (b)
DHV-1 ZI07-1 VP1 714 EF502168 Liu et al., unpublished (c) China: Zhejiang
DHV-1 ZI07-2 VP1 714 EF502169 Liu et al., unpublished (c) China: Zhejiang
DHV-1 ZI07-3 VP1 714 EF502170 Liu et al., unpublished (c) China: Zhejiang
DHV-1 SH VP1 714 EF502171 Liu et al., unpublished (c) China: Shanghai (vaccine strain)
DHV-1 ZJ-A2 VP1 714 EF502172 Liu et al., unpublished (c) China: Zhejiang (vaccine strain)
DHV-1 HSS CG 7691 DQ812092 Kim et al., 2007b South Korea, 1995
DHV-1 HS CG 7691 DQ812094 Kim et al., 2007b South Korea, 1994
DHV-1 E42 2A-AIG1 protein (p) 483 EF636608 Jiang et al., unpublished China
DHV-1 E3 2A-AIG1 protein (p) 498 EF636609 Jiang et al., unpublished China
DHV-1 JX 2A-AIG1 protein (p) 498 EF636610 Jiang et al., unpublished China
DHV-1 PX 2A-AIG1 protein (p) 498 EF636611 Jiang et al., unpublished China
DHV-1 XZ VP1 714 EF653378 Wang et al., unpublished China: XuZhou
DHV-1 F CG 7691 EU264072 Wu et al., unpublished China: Fang-Shan area, BeiJing
DHV-1 C-XNH P1 2193 EU106090 Wang & Zhang, unpublished China: TianJin
3D(p) 440 EU106098
DHV-1 C-NMG P1 2193 EU106091 Wang & Zhang, unpublished China
3D(p) 440 EU106099
DHV-1 C-QYD P1 2193 EU106092 Wang & Zhang, unpublished. China: Beijing; 2006
3D(p) 440 EU106100
DHV-1 C-CQ5 P1 2193 EU106093 Wang & Zhang, unpublished China: ChongQing; 2006
3D(p) 440 EU106101
DHV-1 C-PX P1 2193 EU106094 Wang & Zhang, unpublished China: JiangSu; 2005
3D(p) 440 EU106102
DHV-1 C-C1H P1 2193 EU106095 Wang & Zhang, unpublished China
3D(p) 440 EU106103
DHV-1 C-SN P1 2193 EU106096 Wang & Zhang, unpublished China: HeBei; 2001
3D(p) 440 EU106104
DHV-1 C-ZC P1 2193 EU106097 Wang & Zhang, unpublished China: ShanDong; 2005
3D(p) 440 EU106105
DHV-1 JH2 CG 7708 EU395435 Ma et al., unpublished China
DHV-1 JH1 CG 7709 EU395436 Ma et al., unpublished China
DHV-1 YN CG 7708 EU395437 Ma et al., unpublished China
DHV-1 FS CG 7707 EU395438 Ma et al., unpublished China
DHV-1 ZZ CG 7708 EU395439 Ma et al., unpublished China
DHV-1 Vaccine strain CG 7711 EU395440 Ma et al., unpublished China
DHV-1 CL CG 7709 EF427899 Ma et al., unpublished China
DHV-1 YZ CG 7713 EF427900 Ma et al., unpublished China
DHV-1 161/79/V CG 7669 EU753359 Gan et al., unpublished China: JiangSu; June 2003
CG = complete genome; (p) = partial gene sequence.
* length with poly(A) tails removed.

References

Ding, C. and Zhang, D. (2007). Molecular analysis of duck hepatitis virus type 1. Virology 361: 9-17.

Ding, C.Y. and Zhang, D.B. Using 3'RACE to determine the 3'terminal sequence of genome RNA of duck hepatitis virus.  Unpublished.

Feng, L.F., Wu, P.F., Zhang, G.Z., Su, J.L. and Han, B. Genome analysis of Duck hepatitis virus type 1 strain S. Unpublished. [College of Veterinary Medicine, China Agricultural University, Yuanmingyuan West Road No. 2, Beijing 100094, China]

Feng, L.F., Wu, P.F., Zhang, G.Z., Han, B. and Su, J.L. Genome analysis of Duck hepatitis virus type 1 strain JX. Unpublished. [Department of Preventative Veterinary Medicine, College of Veterinary Medicine, Yuanmingyuan West Road No. 2, Beijing 100094, China]

Jiang, Y., Wang, L. and Zhang, D. Unpublished. [China Agricultural University, College of Veterinary Medicine, Yuanmingyuan West Road No. 2, Beijing 100094, China]

Kim, M.-C., Kwon, Y.-K., Joh, S.-J., Lindberg, A.M., Kwon, J.-H., Kim, J.-H. and Kim, S.-J. (2006). Molecular analysis of duck hepatitis virus type 1 reveals a novel lineage close to the genus Parechovirus in the family Picornaviridae. J. Gen. Virol. 87: 3307-3316.

Kim, M.C., Kwon, Y.K., Joh, S.J., Kwon, J.H., Kim, J.H. and Kim, S.J. (2007a). Development of one-step reverse transcriptase-polymerase chain reaction to detect duck hepatitis virus type 1. Avian Dis. 51: 540-545.

Kim, M.C., Kwon, Y.K., Joh, S.J., Kim, S.J., Tolf, C., Kim, J.H., Sung, H.W., Lindberg, A.M. and Kwon, J.H. (2007b). Recent Korean isolates of duck hepatitis virus reveal the presence of a new geno- and serotype when compared to duck hepatitis virus type 1 type strains. Arch. Virol. 152: 2059-2072.

Liu, G., Wang, F., Ni, Z. and Hua, J. (a). Sequencing and analysis of a duck hepatitis virus type I strain from southeast China. Unpublished. [Institute of Virology and Biotechnology, Zhejiang Academy of Agricultural Sciences, No.198 Shi Qiao Road, Hangzhou, Zhejiang 310021, China]

Liu, G., Wang, F. and Hua, J. (b). The complete sequence of VP1 gene of DHV-1. Unpublished.

Liu, G., Ni, Z. and Hua, J. (c). Unpublished. [Zhejiang Academy of Agricultural Sciences, Institute of Virology and Biotechnology, Hangzhou Shiqiao Rd.198., Hangzhou, Zhejiang 310021, China]

Luo, Y.J., Zhang, G.H., Chen, J.H. and Zhang, J.P. (a). Molecular analysis of duck hepatitis virus type 1. Unpublished. [College of Veterinary Medicine, South China Agricultural University, Wushan, Guanghzou, Guangdong 510642, China]

Luo, Y.J., Zhang, G.H., Chen, J.H., Zhang, J.P., Liao, M. and Xu, X.Q. (b). Molecular analysis of Duck hepatitis virus 1 of strain R. Unpublished. [College of Veterinary Medicine, South China Agricultural University, Wushan, Guangzhou, Guangdong 510642, China]

Ma, X.L., Yu, K.X., Song, M.X., Huang, B., Li, Y.F., Wu, J. and Lin, S.Q. Determination of the whole genome of duck hepatitis virus isolates from China. Unpublished. [Key Lab of Poultry Disease Diagnostics and Immunology, Institute of Poultry Science, Shandong Academy of Agriculture, No. 1 Jiaoxiao Road, Jinan, Shandong 250023, China]

Tseng, C.H., Knowles, N.J. and Tsai, H.J. (2007). Molecular analysis of type 1 duck hepatitis virus indicated that it should be assigned to a new genus. Virus Research 123: 190-203.

Wang, L. and Zhang, D. Unpublished. [College of Veterinary Medicine, China Agricultural University, Yuanmingyuan West Road No. 2, Beijing, Beijing 100094, China]

Wang, C., Xu, W.Z., Dang, Z.G. and Chen, P.Y. Unpublished. [Key Laboratory of Animal Disease Diagnositic & Immunology, Ministry of Agriculture, College of Veterinary Medicine, Nanjing Agricultrual University, No.1 Weigang, Nanjing, Jiangsu 210095, China]

Wu, P.F., Zhang, G.Z., Su, J.L., Han, B. and Feng, L.F. Sequencing and further analysis of duck hepatitis virus 1 strain F. Unpublished. [College of Veterinary Medicine, China Agricultural Universty, Yuanmingyuan West Road No. 2, BeiJing 100094, China]

Xin, H.Y., Cheng, A.C. and Wang, M.S. Method of the RT-PCR for the detection of duck hepatitis virus 1. Unpublished. [College of Animal Science and Veterinary Medicine, Sichuan Agricultural University, 46# Xinkang Road, Ya'an, Sichuan 625014, P.R. China.]

Zhang, Y. and Guo, D. Unpublished. [National Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, No. 427 Maduan Street, Harbin 150001, P.R. China]

Zhang, X.F., Zhao, R.H. and Wen, L.B. (a) Unpublished [Veterinary Science, Jiangsu Academy of Agricultural Sciences, Zhong Ling Street 50, Nan Jing, Jiangsu 210014, China].

Zhang, W., Zhang, W.P., Gu, C.Q., Hu, X.Y., Jin, X., Wang, H. and Cheng, G.F. (b) Molecular analysis of duck hepatitis virus type 1 of strain JX. Unpublished. [College of Veterinary Medicine, Huazhong Agricultural University, Shizishan Road No.1, Wuhan, Hubei 430070, China.]
 

 

 
Copyright © 2006 Institute for Animal Health, UK.