HEV-A seqs

Child level
EV-71 seqs

Same level
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Genus: Enterovirus

Species: Human enterovirus A

Serotype: Coxsackievirus A2 (CV-A2)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Coxsackievirus A3 (CV-A3)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Coxsackievirus A4 (CV-A4)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Coxsackievirus A5 (CV-A5)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Coxsackievirus A6 (CV-A6)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Coxsackievirus A7 (CV-A7)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Coxsackievirus A8 (CV-A8)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Coxsackievirus A10 (CV-A10)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Coxsackievirus A12 (CV-A12)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Coxsackievirus A14 (CV-A14)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Coxsackievirus A16 (CV-A16)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus 71 (EV-71)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus 76 (EV-76)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus 89 (EV-89)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus 90 (EV-90)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus 91 (EV-91)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus 92 (EV-92)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Simian virus 19 (SV19)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Simian virus 43 (SV43)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Simian virus 46 (SV46)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Baboon enterovirus A13 (A13)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR

(White areas indicate genes which haven't yet been sequenced completely; grey areas are where only partial sequences exist)

References

Virus Strain Region

Length

Accession No.

 Reference Comments

Coxsackievirus A2 (CV-A2)
CV-A2 Fleetwood* (Delaware/47) P1+2A 3024 L28146 Pöyry et al., 1994  
3D(p) 390 X87585 Pulli et al., 1995  

Coxsackievirus A3 (CV-A3)
CV-A3 J.Ol. (Olson)* (New York/48) 5'NCR(p),1AB(p),3D(p),3'NCR(p) 198,210,390,68 X87586 Pulli et al., 1995  
VP1 882 AF081294 Oberste et al., 1999  

Coxsackievirus A4 (CV-A4)
CV-A4 High Point* (North Carolina/50) 3'NCR(p) 66 X87587 Pulli et al., 1995  
VP2(p) ? ? Oberste et al., 1998  
VP1 915 AF081295 Oberste et al., 1999  
VP4+VP2(p) 561 AF117695 M.N. Mulders and T. Hovi, unpublished data  

Coxsackievirus A5 (CV-A5)
CV-A5 G.S. (Swartz)* (New York/50) 5'NCR(p),1AB(p),3D(p),3'NCR(p) 199,210,390,68 X87588 Pulli et al., 1995  
VP1 885 AF081296 Oberste et al., 1999  

Coxsackievirus A6 (CV-A6)
CV-A6 Gdula* VP2(p) ? ? Oberste et al., 1998  
VP1 915 AF081297 Oberste et al., 1999  

Coxsackievirus A7 (CV-A7)
CV-A7 AB-IV (Russian) 5'NCR(p),1AB(p),3D(p),3'NCR(p) 200,210,390,68 X87589 Pulli et al., 1995  
VP1 888 AF081298 Oberste et al., 1999  
CV-A7 Parker 5'NCR(p) 254 AF068879 Muir et al., unpublished  
VP4+VP2(p) 576 AF117696 M.N. Mulders and T. Hovi, unpublished data  

Coxsackievirus A8 (CV-A8)
CV-A8 C.D. (Donovan)* (New York/49) 5'NCR(p),1AB(p),3'NCR(p) 199,210,68 X87590 Pulli et al., 1995  
VP1 882 AF081299 Oberste et al., 1999  

Coxsackievirus A10 (CV-A10)
CV-A10 M.K. (Kowalik)* (New York/50) 1AB(p),3D(p) 210,390 X87591 Pulli et al., 1995  
VP1 894 AF081300 Oberste et al., 1999  

Coxsackievirus A12 (CV-A12)
CV-A12 Texas 12* (Texas/48) 5'NCR(p),3D(p),3'NCR(p) 199,390,68 X87593 Pulli et al., 1995  
VP2(p) ? ? Oberste et al., 1998  
VP1 888 AF081302 Oberste et al., 1999  

Coxsackievirus A14 (CV-A14)
CV-A14 G-14* (South Africa/50) 5'NCR(p),1AB(p),3D(p),3'NCR(p) 199,210,390,66 X87595 Pulli et al., 1995  
VP2(p) ? ? Oberste et al., 1998  
VP1 888 AF081304 Oberste et al., 1999  

Coxsackievirus A16 (CV-A16)
CV-A16 G-10* (South Africa/51) CG 7413 U05876 Pöyry et al., 1994  
CV-A16 Tainan/5079/98 (Taiwan) CG 7410 AF177911 Yan et al., 2001  
CV-A16 An 5'NCR(p) ~281 N/A L. Kinnunen, unpub.  
CV-A16 Koist 5'NCR(p) ~477 N/A L. Kinnunen, unpub.  
CV-A16 Ordin 5'NCR(p) ~450 N/A L. Kinnunen, unpub.  
CV-A16 Netherlands/86 1AB(p),3D(p) ? N/A Pulli et al., 1995  
CV-A16 Netherlands/87 1AB(p),3D(p) ? N/A Pulli et al., 1995  
CV-A16 Ohio/89 1AB(p),3D(p) ? N/A Pulli et al., 1995  
CV-A16 Washington/90 1AB(p),3D(p) ? N/A Pulli et al., 1995  
CV-A16 Finland/91 1AB(p),3D(p) ? N/A Pulli et al., 1995  

Enterovirus 71 (EV-71)
Enterovirus 71

Enterovirus 76 (EV-76)
EV-76 FRA91-10369* CG 7438 AY697458 Oberste et al., 2005a  

Enterovirus 89 (EV-89)
EV-89 BAN00-10359* CG 7429 AY697459 Oberste et al., 2005a  
EV-89 BAN00-10360 P1 2592 AY697472 Oberste et al., 2005a
3D(p) 748 AY697500 Oberste et al., 2005a  

Enterovirus 90 (EV-90)
EV-90 BAN99-10399* CG 7425 AY697460 Oberste et al., 2005a  
EV-90 F950027 CG 7438 AY773285 van den Broek et al., unpub.  
EV-90 CAM1956 CG 7425 AB192877 Shimizu et al., unpub.  
EV-90 BAN99-10260 VP1   N/A Oberste et al., unpublished  

Enterovirus 91 (EV-91)
EV-91 BAN00-10406* CG 7427 AY697461 Oberste et al., 2005a  
EV-91 BAN00-10262 VP1   N/A Oberste et al., unpublished  
EV-91 BAN99-10407 P1 2595 AY697476 Oberste et al., 2005a  
3D(p) 747 AY697507 Oberste et al., 2005a  

Enterovirus 92 (EV-92)
EV-92 GA01-10263* VP1   N/A Oberste et al., unpublished  
EV-92 USA/GA99-934 VP1(p) 291 EU194514 Nix et al., unpublished  
3D(p) 609 EU194488 Nix et al., unpublished  
EV-92 USA/GA99-OPE228 VP1(p) 255 EU194515 Nix et al., unpublished  
3D(p) 525 EU194489 Nix et al., unpublished  
EV-92 USA/GA99-PJf-1 VP1(p) 295 EU194516 Nix et al., unpublished  
3D(p) 582 EU194490 Nix et al., unpublished  
EV-92 USA/GA99-RBz-4 VP1(p) 282 EU194519 Nix et al., unpublished  
3D(p) 624 EU194493 Nix et al., unpublished  
EV-92 USA/GA99-RFk-5 VP1(p) 291 EU194521 Nix et al., unpublished  
3D(p) 624 EU194495 Nix et al., unpublished  
EV-92 USA/GA99-RFl-5 VP1(p) 285 EU194522 Nix et al., unpublished  
3D(p) 618 EU194496 Nix et al., unpublished  
EV-92 USA/GA2000-RGg-6 VP1(p) 295 EU194523 Nix et al., unpublished
3D(p) 617 EU194497 Nix et al., unpublished  
EV-92 USA/GA99-RHa-2 VP1(p) 295 EU194524 Nix et al., unpublished  
3D(p) 624 EU194498 Nix et al., unpublished  
EV-92 USA/GA99-RJg-7 CG 7379 EF667344 Oberste et al., unpublished  
VP1(p) 285 EU194526 Nix et al., unpublished  
3D(p) 624 EU194500 Nix et al., unpublished  
EV-92 USA/GA99-RJo-3 VP1(p) 239 EU194527 Nix et al., unpublished  
3D(p) 624 EU194501 Nix et al., unpublished  
EV-92 USA/GA99-RKk-6 VP1(p) 216 EU194528 Nix et al., unpublished  
3D(p) 624 EU194502 Nix et al., unpublished  
EV-92 USA/GA99-RKp-5 VP1(p) 282 EU194529 Nix et al., unpublished  
3D(p) 595 EU194503 Nix et al., unpublished  
EV-92 USA/GA99-RLq VP1(p) 297 EU194530 Nix et al., unpublished  
3D(p) 624 EU194504 Nix et al., unpublished  
EV-92 USA/GA99-RMm-5 VP1(p) 291 EU194531 Nix et al., unpublished
3D(p) 624 EU194505 Nix et al., unpublished  
EV-92 USA/GA99-RNr-5 VP1(p) 285 EU194534 Nix et al., unpublished  
3D(p) 581 EU194508 Nix et al., unpublished  
EV-92 USA/GA99-RQd-6 VP1(p) 295 EU194535 Nix et al., unpublished  
3D(p) 624 EU194509 Nix et al., unpublished  
EV-92 USA/GA99-RTg-5 VP1(p) 262 EU194536 Nix et al., unpublished  
3D(p) 624 EU194510 Nix et al., unpublished  
EV-92 USA/GA99-FOi VP1(p) 194 EU194540 Nix et al., unpublished  
EV-92 USA/GA99-PAi-1 VP1(p) 297 EU194542 Nix et al., unpublished  
EV-92 USA/GA99-RHp-4 VP1(p) 297 EU194545 Nix et al., unpublished  
EV-92 USA/GA99-RUs-4 VP1(p) 297 EU194549 Nix et al., unpublished  

Simian virus 19 (SV19)
SV19 SV19-M19s 5'NCR(p) 420 EF364418 Pöyry et al., 1999; Smura et al., 2007  
CG 7373 AF326754 Oberste et al, 2002; Oberste et al, 2007  
SV19 SV26-3163 5'NCR(p) 417 EF364419 Pöyry et al., 1999; Smura et al., 2007  
VP1 861 AF326756 Oberste et al, 2002  
3D(p) 489 N/A Pöyry et al., 1999
SV19 SV35-A7987 5'NCR(p) 418 EF364421 Pöyry et al., 1999; Smura et al., 2007  
VP1 858 AF326758 Oberste et al, 2002  
3D(p) 489 N/A Pöyry et al., 1999  
SV19 USA/GA99-PKm-1 VP1(p) 295 EU194517 Nix et al., unpublished  
3D(p) 624 EU194491 Nix et al., unpublished  
SV19 USA/GA99-RJd-6 VP1(p) 237 EU194525 Nix et al., unpublished  
3D(p) 624 EU194499 Nix et al., unpublished  
SV19 USA/GA99-RTV VP1(p) 295 EU194537 Nix et al., unpublished  
3D(p) 624 EU194511 Nix et al., unpublished  
SV19 USA/GA99-RUh-6 VP1(p) 295 EU194538 Nix et al., unpublished  
3D(p) 570 EU194512 Nix et al., unpublished  
SV19 USA/GA99-RUt-5 VP1(p) 295 EU194539 Nix et al., unpublished  
3D(p) 594 EU194513 Nix et al., unpublished  

Simian virus 43 (SV43)
SV43 OM112t* CG 7348 AF326761 Oberste et al, 2002; Oberste et al, 2007  
5'NCR(p) 419 EF364422 Pöyry et al., 1999; Smura et al., 2007  
3D(p) 489 N/A Pöyry et al., 1999  

Simian virus 46 (SV46)
SV46 OM22* CG 7393 AF326764 Oberste et al, 2002; Oberste et al, 2007  
5'NCR(p) 417 EF364423 Pöyry et al., 1999; Smura et al., 2007  
3D(p) 489 N/A Pöyry et al., 1999  
SV46 USA/GA99-RDn-4 VP1(p) 295 EU194520 Nix et al., unpublished  
3D(p) 624 EU194494 Nix et al., unpublished  
SV46 USA/GA99-RNm-5
captive Rhesus macaque
(Macaca mulatta) 		CG 7395 EF667343 Oberste et al., unpublished  
VP1(p) 295 EU194532 Nix et al., unpublished  
3D(p) 624 EU194506 Nix et al., unpublished  
SV46 USA/GA99-RNo-6 VP1(p) 295 EU194533 Nix et al., unpublished  
3D(p) 624 EU194507 Nix et al., unpublished  
SV46 USA/GA99-RJr-6 VP1(p) 301 EU194546 Nix et al., unpublished  
SV46 USA/GA99-RKa-1 VP1(p) 297 EU194547 Nix et al., unpublished  
SV46 USA/GA99-ROi-1 VP1(p) 297 EU194548 Nix et al., unpublished  
SV46 USA/GA99-RVg-3 VP1(p) 297 EU194550 Nix et al., unpublished  

Baboon enterovirus A13 (A13)
A13 A13* CG 7389 AF326750 Oberste et al, 2002; Oberste et al, 2007  
5'NCR(p) 419 EF364414 Pöyry et al., 1999; Smura et al., 2007  
3D(p) 489 N/A Pöyry et al., 1999  
CG, complete genome
(p), partial gene sequence
*, prototype strain

References

 

 
Copyright © 2006 Institute for Animal Health, UK.Copyright © 2006-2008 Institute for Animal Health, UK.