|
|
| |
|
| |
Genus: Enterovirus
Species: Human enterovirus B
| Serotype:
Coxsackievirus (CV-B1) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Coxsackievirus (CV-B2) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Coxsackievirus (CV-B3) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Coxsackievirus (CV-B4) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Coxsackievirus (CV-B5)
(incl.
SVDV) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Coxsackievirus (CV-B6) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Coxsackievirus (CV-A9) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 1 (E-1) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 2 (E-2) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 3 (E-3) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 4 (E-4) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 5 (E-5) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 6 (E-6) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 7 (E-7) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 9 (E-9) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 11 (E-11) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 12 (E-12) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 13 (E-13) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 14 (E-14) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 15 (E-15) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 16 (E-16) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 17 (E-17) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 18 (E-18) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 19 (E-19) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 20 (E-20) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 21 (E-21) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 24 (E-24) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 25 (E-25) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 26 (E-26) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 27 (E-27) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 29 (E-29) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus 30 (E-30) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus (E-31) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus (E-32) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype:
Echovirus (E-33) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Enterovirus 69 (EV-69) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Enterovirus 73 (EV-73) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Enterovirus 74 (EV-74) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Enterovirus 75 (EV-75) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Enterovirus 77 (EV-77) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Enterovirus 78 (EV-78) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Enterovirus 79 (EV-79) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Enterovirus 80 (EV-80) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Enterovirus 81 (EV-81) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Enterovirus 82 (EV-82) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Enterovirus 83 (EV-83) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Enterovirus 84 (EV-84) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Enterovirus 85 (EV-85) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Enterovirus 86 (EV-86) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Enterovirus 87 (EV-87) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Enterovirus 88 (EV-88) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Enterovirus 93 (EV-93) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Enterovirus 97 (EV-97) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Enterovirus 98 (EV-98) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Enterovirus 100 (EV-100) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Enterovirus 101 (EV-101) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Enterovirus 106 (EV-106) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Enterovirus 107 (EV-107) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: Simian agent 5 (SA5) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Unclassified enterovirus isolated from pigs |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| |
|
|
(White areas indicate genes which haven't yet been
sequenced completely; grey areas are where only partial sequences exist)
References
| Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
Coxsackievirus B1 (CV-B1)
|
| CV-B1 |
Japan |
CG |
7389 |
M16560 |
Iizuka et al., 1987 |
|
Coxsackievirus B2 (CV-B2)
|
| CV-B2 |
Ohio-1/Ohio/US/47* |
CG |
7403 |
AF081485 |
Zell et al., 1998 |
|
| CG |
7411 |
AF085363 |
Polacek et al., 1999 |
|
| VP2(p) |
? |
? |
Oberste et al., 1998 |
|
|
VP1 |
852 |
AF081312 |
Oberste et al., 1999 |
|
| 5' NCR(p) |
385 |
Y09512 |
Heim et al., 1997 |
|
| CV-B2 |
Pretorius |
5' NCR(p) |
256 |
AF068882 |
Muir et al., unpublished |
|
Coxsackievirus B3 (CV-B3)
|
| CV-B3 |
Nancy/Connecticut/US/49* |
CG (consensus) |
7399 |
M88483 |
Consensus of those listed below |
|
| CG |
7399 |
M33854 |
Klump et al., 1990 |
|
| CG |
7396 |
M16572 |
Lindberg et al., 1987 |
|
| 5' NCR+P1+2A |
3822 |
M21949 |
Tracy et al., 1985 |
|
| CV-B3 |
0 (non-cardiovirulent) |
CG |
7400 |
N/A |
Chapman et al., 1994 |
|
| CV-B3 |
20 (cardiovirulent) |
CG |
7399 |
N/A |
Tracy et al., 1992 |
|
| CV-B3 |
Woodruff variant |
CG |
7400 |
U57056 |
Knowlton et al., 1996 |
|
| CV-B3 |
CO |
5' NCR(p) |
660 |
AF169665 |
Romero et al., 1997; Dunn et al., unpublished |
|
| P1 |
2553 |
AF169666 |
Dunn et al., unpublished |
|
| CV-B3 |
AS |
5' NCR(p) |
654 |
AF169670 |
Romero et al., 1997; Dunn et al., unpublished |
|
| P1 |
2553 |
AF169671 |
Dunn et al., unpublished |
|
| CV-B3 |
31-1-93 |
CG |
7400 |
AF231763 |
Schmidtke et al., 2000 |
|
| CV-B3 |
P |
CG |
7400 |
AF231764 |
Schmidtke et al., 2000 |
|
| CV-B3 |
PD |
CG |
7400 |
AF231765 |
Schmidtke et al., 2000 |
|
| CV-B3 |
HA (ATCC VR-688) |
P1 |
3000 |
AF231766 |
Schmidtke et al., 2000 |
see: Goldfield M. Proc. Soc. Exp. Biol. Med.
96: 788, 1957 |
Coxsackievirus B4 (CV-B4)
|
| CV-B4 |
JVB/New York/US/51 (Benschoten)* |
CG; 5' NCR+P1 |
7395; 3298 |
X05690 |
Jenkins et al., 1987; Ramsingh et al.,
1992 |
|
| CV-B4 |
V |
5' NCR+P1 |
3298 |
S39291 |
Ramsingh et al., 1992 |
|
| CV-B4 |
E2 (derived from Edwards strain) |
CG |
7397 |
S76772 |
Kang et al., 1994 |
|
| CG |
7397 |
AF311939 |
Lindberg, A.M. and Andersson, P., unpub. |
|
| CV-B4 |
VD2921 |
CG |
7392 |
AF328683 |
Yin et al., 2002 |
This sequence contains a number of frame-shift
errors |
| CV-B4 |
? |
CG |
? |
? |
Titchener et al., 1994 |
|
Coxsackievirus B5 (CV-B5)
|
| CV-B5 |
Faulkner/Kentucky/US/52* |
CG |
7400 |
AF114383 |
Lindberg and Polacek, 2000 |
|
| CV-B5 |
1954/UK/85 (Peterborough/UK/85) |
CG |
7402 |
X67706 |
Zhang et al., 1993 |
|
| CV-B5 |
2137/Wisconsin/US/70 |
VP1 |
849 |
AJ004641 |
Zhang et al., 1999 |
|
| 3BC |
644 |
AJ004609 |
Zhang et al., 1999 |
|
| CV-B5 |
Sweden/79 |
VP1 |
849 |
AJ004642 |
Zhang et al., 1999 |
|
| 3BC |
644 |
AJ004607 |
Zhang et al., 1999 |
|
| CV-B5 |
1603/Finland/82 |
VP1 |
849 |
AJ004643 |
Zhang et al., 1999 |
|
| 3BC |
644 |
AJ004605 |
Zhang et al., 1999 |
|
| CV-B5 |
111/Pakistan/90 |
VP1(p) |
212 |
AJ004644 |
Zhang et al., 1999 |
|
| 3BC |
644 |
AJ004606 |
Zhang et al., 1999 |
|
| 5'NCR(p)+ |
~664 |
N/A |
L. Kinnunen, unpub. |
|
| CV-B5 |
004/Pakistan/90 |
5'NCR(p)+ |
~620 |
N/A |
L. Kinnunen, unpub. |
|
| CV-B5 |
9954/Birmingham/UK/73 |
3BC |
644 |
AJ004608 |
Zhang et al., 1999 |
|
| CV-B5 |
9030/Idaho/US/77 |
3BC |
644 |
AJ004610 |
Zhang et al., 1999 |
|
| CV-B5 |
C15263-118/99 |
VP1(p) |
524 |
AY208112 |
Norder et al., 2003 |
|
|
|
Coxsackievirus B6 (CV-B6)
|
| CV-B6 |
Schmitt/Philippines/53 (1-15-21)* |
CG |
7398 |
AF039205 |
Zell et al., 1998 |
|
| VP2(p) |
? |
? |
Oberste et al., 1998 |
|
|
VP1 |
846 |
AF081313 |
Oberste et al., 1999 |
|
| CG |
7398 |
AF105342 |
Martino et al., 1999 |
|
| CG |
7397 |
AF114384 |
Lindberg et al., unpublished |
|
| CV-B6 |
??? |
5'UTR+P1 |
3411 |
AB017151 |
Sato et al., unpublished |
|
Coxsackievirus A9 (CV-A9)
|
| CV-A9 |
Griggs |
CG |
7452 |
D00627 |
Chang et al., 1989 |
|
| CV-A9 |
Bozek |
5'UTR(p) |
390 |
AF303043 |
Siafakas et al., 2002 |
|
Echovirus 1 (E-1) includes echovirus 8
|
| E-1 |
Farouk/Egypt/51* |
5'NCR(p)+VP2 |
1412 |
X89531 |
Huttunen et al., 1996 |
|
| CG |
7397 |
AF029859 |
Filman et al., unpub. |
|
|
VP1 |
852 |
AF081314 |
Oberste et al., 1999 |
|
| E-1 |
2453 |
5'NCR(p) |
~640 |
N/A |
L. Kinnunen, unpub. |
|
| E-8 (E-1) |
Bryson* (Ohio) |
5'NCR(p)+VP2(p) |
776 |
X89539 |
Huttunen et al., 1996 |
note: Echovirus 8 is a variant of Echovirus 1 |
|
VP1 |
843 |
AF081325 |
Oberste et al., 1999 |
| P1 |
2645 |
AF250874 |
Ohman et al., 2001 |
|
Echovirus 2 (E-2)
|
| E-2 |
Cornelis/Connecticut/US/51* |
5'NCR(p)+VP2(p) |
779 |
X89532 |
Huttunen et al., 1996 |
|
| 5'NCR(p) |
297 |
U11707 |
Romero and Rotbart, 1995 |
ref. has 1 extra nt at 5'end and 11 at 3' end |
|
VP1 |
882 |
AF081315 |
Oberste et al., 1999 |
|
|
CG |
7435
|
AY302545 |
Oberste et al., 2004a |
|
|
CG |
7435 |
AF465518 |
Lindberg et al., unpub. |
|
Echovirus 3 (E-3)
|
| E-3 |
Morrisey/Connecticut/US/51* |
5'NCR(p)+VP2(p) |
779 |
X89533 |
Huttunen et al., 1996 |
|
|
VP1 |
879 |
AF081316 |
Oberste et al., 1999 |
|
|
CG |
7428
|
AY302553 |
Oberste et al., 2004a |
|
Echovirus 4 (E-4)
|
| E-4 |
Pesacek/Connecticut/US/51* |
5'NCR |
629 |
X89534 |
Huttunen et al., 1996 |
|
| 5'NCR(p) |
297 |
U11708 |
Romero and Rotbart, 1995 |
ref. has 1 extra nt at 5'end and 11 at 3' end |
| VP2(p) |
? |
? |
Oberste et al., 1998 |
|
|
VP1 |
843 |
AF081317 |
Oberste et al., 1999 |
|
|
CG |
7394
|
AY302557 |
Oberste et al., 2004a |
|
| E-4 |
Du Toit |
VP2(p) |
? |
? |
Oberste et al., 1998 |
|
|
VP1 |
843 |
AF081318 |
Oberste et al., 1999 |
|
| E-4 |
Shropshire |
VP2(p) |
? |
? |
Oberste et al., 1998 |
|
|
VP1 |
843 |
AF081319 |
Oberste et al., 1999 |
|
|
E-4 |
Stuttgart 97 |
P1+2A(p) |
3163 |
AF132497 |
Kuenkel, U. and Schreier, E. Unpublished |
|
| E-4 |
Jasi 99 (Romania) |
P1(p)+2A(p) |
2466 |
AF222977 |
Kuenkel, U. and Schreier, E. Unpublished |
|
| E-4 |
Yanbian_96-85csf (see comments) |
CG |
7456 |
AF233852 |
L. Chen and L. Zhang, unpublished |
These sequences appear to have numerous errors
resulting in a number of frameshifts |
| E-4 |
Yanbian_96-83csf (see comments) |
CG |
7456 |
AF230973 |
L. Chen and L. Zhang, unpublished |
Echovirus 5 (E-5)
|
| E-5 |
Noyce/Maine/54* |
5'NCR(p)+VP2(p) |
778 |
X89535 |
Huttunen et al., 1996 |
|
| CG |
7433 |
AF083069 |
Lindberg et al., 1999 |
|
|
VP1 |
876 |
AF081320 |
Oberste et al., 1999 |
|
Echovirus 6 (E-6)
|
| E-6 |
D'Amori* (Rhode Island/55) |
VP2(p) |
150 |
X89536 |
Huttunen et al., 1996 |
|
| 5'NCR(p) |
297 |
U11709 |
Romero and Rotbart, 1995 |
ref. has 1 extra nt at 5'end and 11 at 3' end |
|
VP1 |
867 |
AF081321 |
Oberste et al., 1999 |
|
|
CG |
7418
|
AY302558 |
Oberste et al., 2004a |
|
| E-6' |
Cox |
VP2(p) |
? |
? |
Oberste et al., 1998 |
|
|
VP1 |
867 |
AF081322 |
Oberste et al., 1999 |
|
| E-6'' |
Burgess (Connecticut) |
VP2(p) |
150 |
X89537 |
Huttunen et al., 1996 |
|
|
VP1 |
867 |
AF081323 |
Oberste et al., 1999 |
|
| E-6 |
Charles |
CG |
7418 |
AF465517 |
Lindberg and Righthand, unpub. |
|
| E-6 |
Charles "wild type, lytic" |
3B-3D |
2100
|
U05851 |
Gratsch & Righthand, 1994 |
|
| CG |
7417 |
U16283 |
F. Righthand, et al, unpub. |
|
| E-6 |
Charles "non-lytic persistent" |
3B-3D |
2100 |
U05852 |
Gratsch & Righthand, 1994 |
|
| E-6 |
? |
3'NCR |
99 |
M27727 |
Auvinen et al., 1989 |
|
| E-6 |
II |
5'NCR(p) |
~735 |
N/A |
L. Kinnunen, unpub. |
|
Echovirus 7 (E-7)
|
| E-7 |
Wallace* (Ohio) |
5'NCR(p) |
~715 |
N/A |
L. Kinnunen, unpub. |
|
| 3D(p) |
360 |
X89538 |
Huttunen et al., 1996 |
|
| VP2(p) |
? |
? |
Oberste et al., 1998 |
|
|
VP1 |
876 |
AF081324 |
Oberste et al., 1999 |
|
|
CG |
7427 |
AY036579 |
Chua et al., 2001. |
|
|
CG |
7427
|
AY302559 |
Oberste et al., 2004a |
|
|
CG |
7427 |
AF465516 |
Lindberg et
al., unpub. |
|
| E-7 |
UMMC |
CG |
7426 |
AY036578 |
Chua et al., 2001 |
|
Echovirus 9 (E-9)
|
| E-9 |
Hill/Ohio/US/53* |
5'NCR(p) |
297 |
U11710 |
Romero and Rotbart, 1995 |
ref. has 1 extra nt at 5'end and 11 at 3' end |
| CG |
7420 |
X84981 |
Zimmermann et al., 1995 |
|
| E-9 |
Barty |
3B; 3C |
66; 549 |
M12165;
M12167 |
Werner et al., 1986 |
|
| CG |
7451 |
X92886 |
Zimmermann et al., 1996 |
|
| E-9 |
AMC 3 |
5'NCR+VP4+VP2(p) |
1136 |
U77070 |
Jung et al., unpublished |
|
| VP3(p)+VP1(p) |
272 |
U77071 |
Jung et al., unpublished |
|
| VP1(p)+2A(p) |
378 |
U77069 |
Jung et al., unpublished |
|
| 2C(p) |
305 |
U77072 |
Jung et al., unpublished |
|
|
E-9
|
No.66/Kurume/97
|
VP1+2A(p)
|
903
|
AB055923
|
Hara et al., unpublished
|
|
|
E-9
|
No.6A/Kurume/97
|
VP1+2A(p)
|
903
|
AB055924
|
Hara et al., unpublished
|
|
|
E-9 |
DM |
CG |
7453 |
AF524867 |
Paananen et al., 2003 |
|
Echovirus 11 (E-11)
|
| E-11 |
Gregory* (Ohio) |
3'NCR |
98 |
M27740 |
Auvinen et al., 1989 |
|
| P2+P3+3'NCR |
4224 |
D01068 |
Auvinen & Hyypiä, 1990 |
see also:
D10582 |
| CG |
7438 |
X80059 |
Dahllund et al., 1995 |
|
| 5'NCR(p) |
297 |
U11705 |
Romero and Rotbart, 1995 |
paper has 1 extra nt at 5'end and 11 at 3' end |
| E-11' |
Silva |
VP2(p) |
? |
? |
Oberste et al., 1998 |
|
|
VP1 |
876 |
AF081326 |
Oberste et al., 1999 |
|
| E-11 |
Mor/M/82 |
CG |
7382 |
AY167106 |
Lukashev
et al., unpub. |
~20 nt
missing from 5' end of genome |
| E-11 |
Kust/86 |
CG |
7385 |
AY167105 |
Lukashev
et al., unpub. |
~20 nt
missing from 5' end of genome |
| E-11 |
Kar/87 |
CG |
7385 |
AY167104 |
Lukashev
et al., unpub. |
~20 nt
missing from 5' end of genome |
| E-11 |
Hun/90 |
CG |
7385 |
AY167103 |
Lukashev
et al., unpub. |
~20 nt
missing from 5' end of genome |
Echovirus 12 (E-12)
|
| E-12 |
Travis* (Philippines/53) (wildtype) |
CG |
7421 |
X79047 |
Kraus et al., 1995 |
|
| Travis (Rhodanine resistant variant) |
CG |
7421 |
X77708 |
Kraus et al., 1995 |
|
| Travis (Rhodanine dependent variant) |
partial genome |
3924 |
X77709 |
W. Kraus and B.E. Nelsen-Salz, unpub. |
|
| Travis* (Philippines/53) |
VP2(p)+3D(p) |
510 |
X89541 |
Huttunen et al., 1996 |
|
| Travis* (Philippines/53) |
5'NCR(p) |
297 |
U11706 |
Romero and Rotbart, 1995 |
ref. has 1 extra nt at 5'end and 11 at 3' end |
Echovirus 13 (E-13)
|
| E-13 |
Del Carmen* (Philippines/53) |
VP2(p) |
150 |
X89542 |
Huttunen et al., 1996 |
|
|
VP1 |
861 |
AF081327 |
Oberste et al., 1999 |
|
|
CG |
7410
|
AY302539 |
Oberste et al., 2004a |
|
Echovirus 14 (E-14)
|
| E-14 |
Tow* (Rhode Island/54) |
VP2(p) |
150 |
X89543 |
Huttunen et al., 1996 |
|
|
VP1 |
894 |
AF081328 |
Oberste et al., 1999 |
|
|
CG |
7450
|
AY302540 |
Oberste et al., 2004a |
|
Echovirus 15 (E-15)
|
| E-15 |
Ch 96-51 (Charleston)* (West Virginia/51) |
VP2(p) |
150 |
X89544 |
Huttunen et al., 1996 |
|
|
VP1 |
882 |
AF081329 |
Oberste et al., 1999 |
|
|
CG |
7437
|
AY302541 |
Oberste et al., 2004a |
|
Echovirus 16 (E-16)
|
| E-16 |
Harrington* (Massachusetts/51) |
P1 |
2586 |
X89545 |
Huttunen et al., 1996 |
|
|
CG |
7437
|
AY302542 |
Oberste et al., 2004a |
|
Echovirus 17 (E-17)
|
| E-17 |
CHHE-29* (Mexico City) |
VP2(p) |
150 |
X89546 |
Huttunen et al., 1996 |
|
|
VP1 |
867 |
AF081330 |
Oberste et al., 1999 |
|
|
CG |
7416
|
AY302543 |
Oberste et al., 2004a |
|
Echovirus 18 (E-18)
|
| E-18 |
Metcalf* (Ohio) |
VP2(p) |
150 |
X89547 |
Huttunen et al., 1996 |
|
|
VP1 |
861 |
AF081331 |
Oberste et al., 1999 |
|
| CG |
7410 |
AF317694 |
Andersson, P. and Lindberg, A.M., unpub. |
|
| E-18 |
? |
5'NCR(p) |
~734 |
N/A |
L. Kinnunen, unpub. |
|
Echovirus 19 (E-19)
|
| E-19 |
Burke* (Ohio) |
VP2(p)+3D(p) |
510 |
X89548 |
Huttunen et al., 1996 |
|
|
VP1 |
879 |
AF081332 |
Oberste et al., 1999 |
|
|
CG |
7433
|
AY302544 |
Oberste et al., 2004a |
|
|
E-19 |
K/542/81 |
CG |
7391 |
AY167107 |
Lukashev
et al., unpub. |
~20 nt
missing from 5' end of genome |
Echovirus 20 (E-20)
|
| E-20 |
JV-1* (Washington DC/55) |
VP2(p) |
150 |
X89549 |
Huttunen et al., 1996 |
|
| 5' NCR(p) |
240 |
AF068883 |
Muir et al., unpublished |
|
|
VP1 |
843 |
AF081333 |
Oberste et al., 1999 |
|
|
CG |
7394
|
AY302546 |
Oberste et al., 2004a |
|
Echovirus 21 (E-21)
|
| E-21 |
Farina (E26D)* (Massachusetts/50) |
VP2(p) |
150 |
X89550 |
Huttunen et al., 1996 |
|
|
VP1 |
885 |
AF081334 |
Oberste et al., 1999 |
|
|
CG |
7426
|
AY302547 |
Oberste et al., 2004a |
|
Echovirus 24 (E-24)
|
| E-24 |
DeCamp* (Ohio/56) |
VP2(p) |
150 |
X89551 |
Huttunen et al., 1996 |
|
|
VP1 |
882 |
AF081335 |
Oberste et al., 1999 |
|
|
CG |
7433
|
AY302548 |
Oberste et al., 2004a |
|
Echovirus 25 (E-25)
|
| E-25 |
JV-4* (Washington DC/57) |
3D(p) |
360 |
X89552 |
Huttunen et al., 1996 |
|
| 5'NCR+P1+P2(p) |
4378 |
X90722 |
Bailly et al., 1996; Bailly et al., unpublished. |
|
| VP2(p) |
? |
? |
Oberste et al., 1998 |
|
|
VP1 |
876 |
AF081336 |
Oberste et al., 1999 |
|
|
CG |
7426
|
AY302549 |
Oberste et al., 2004a |
|
| E-25 |
"prototype/USA/57" |
VP1(p)+2A(p) |
348 |
AF107285 |
Kuenkel, U. and Schreier, E., unpublished data |
|
| E-25 |
M1262 |
5'NCR+P1+P2(p) |
4395 |
X90723 |
Bailly et al., 1996; Bailly et al., unpublished. |
|
| E-25 |
Th222 |
5'NCR+VP4(p) |
771 |
X90724 |
Bailly et al., 1996; Bailly et al., unpublished. |
|
| E-25 |
792/97 |
VP1(p)+2A(p) |
354 |
AF107280 |
Kuenkel, U. and Schreier, E., unpublished data |
|
| E-25 |
1362/98 |
VP1(p)+2A(p) |
360 |
AF107281 |
Kuenkel, U. and Schreier, E., unpublished data |
|
| E-25 |
1368/98 |
VP1(p)+2A(p) |
822 |
AF107282 |
Kuenkel, U. and Schreier, E., unpublished data |
|
| E-25 |
1369/98 |
VP1(p)+2A(p) |
849 |
AF107283 |
Kuenkel, U. and Schreier, E., unpublished data |
|
| E-25 |
2529/98 |
VP1(p)+2A(p) |
405 |
AF107284 |
Kuenkel, U. and Schreier, E., unpublished data |
|
Echovirus 26 (E-26)
|
| E-26 |
Coronel (11-3-6)* (Philippines/53) |
VP2(p) |
150 |
X89553 |
Huttunen et al., 1996 |
|
|
VP1 |
870 |
AF081337 |
Oberste et al., 1999 |
|
|
VP4+VP2(p) |
576 |
AF117697 |
M.N. Mulders and T. Hovi, unpublished data |
|
|
CG |
7424
|
AY302550 |
Oberste et al., 2004a |
|
Echovirus 27 (E-27)
|
| E-27 |
Bacon (1-36-4)* (Philippines/53) |
VP2(p)+3D(p) |
510 |
X89554 |
Huttunen et al., 1996 |
|
|
VP1 |
855 |
AF081338 |
Oberste et al., 1999 |
|
|
CG |
7412
|
AY302551 |
Oberste et al., 2004a |
|
Echovirus 29 (E-29)
|
| E-29 |
JV-10* (Washington DC/55) |
VP2(p) |
150 |
X89555 |
Huttunen et al., 1996 |
|
| 5' NCR(p) |
263 |
AF068884 |
Muir et al., unpublished |
|
|
VP1 |
876 |
AF081339 |
Oberste et al., 1999 |
|
|
VP4+VP2(p) |
576 |
AF117698 |
M.N. Mulders and T. Hovi, unpublished data |
|
|
CG |
7427
|
AY302552 |
Oberste et al., 2004a |
|
Echovirus 30 (E-30)
|
|
|
Echovirus 31 (E-31)
|
| E-31 |
Caldwell* (Kansas/55) |
VP2(p) |
150 |
X89557 |
Huttunen et al., 1996 |
|
|
VP1 |
876 |
AF081344 |
Oberste et al., 1999 |
|
|
CG |
7432
|
AY302554 |
Oberste et al., 2004a |
|
Echovirus 32(E-32)
|
| E-32 |
PR-10* (Puerto Rico) |
VP2(p) |
150 |
X89558 |
Huttunen et al., 1996 |
|
|
VP1 |
875 |
AF081345 |
Oberste et al., 1999 |
|
|
CG |
7420
|
AY302555 |
Oberste et al., 2004a |
|
Echovirus 33 (E-33)
|
| E-33 |
Toluca-3* (Mexico/59) |
VP2(p) |
150 |
X89559 |
Huttunen et al., 1996 |
|
|
VP1 |
843 |
AF081346 |
Oberste et al., 1999 |
|
|
CG |
7394
|
AY302556 |
Oberste et al., 2004a |
|
Enterovirus 69 (EV-69)
|
| EV-69 |
Toluca-1* (Toluca, Mexico/59) |
5'NCR(p),1AB(p),3D(p) |
199, 210, 390 |
X87605 |
Pulli et al., 1995 |
|
|
VP1 |
861 |
AF081349 |
Oberste et al., 1999 |
|
|
3D(p) |
144 |
AF252146 |
Casas et al.,
2001 |
|
|
VP1(p) |
568 |
AF295526 |
Norder et al., 2001 |
|
|
CG |
7411 |
AY302560 |
Oberste et al., 2004a |
|
Enterovirus 73 (EV-73)
|
| EV-73 |
CA55-1988* |
CG |
7411 |
AF241359;
AF241360 |
Oberste et al., 2001 |
|
| EV-73 |
CA78-1480 |
P1 |
2562 |
AF241361 |
Oberste et al., 2001 |
|
| EV-73 |
OMA95-6498 |
P1 |
2562 |
AF241362 |
Oberste et al., 2001 |
|
| EV-73 |
CA54-4454 |
P1 |
2562 |
AF241363 |
Oberste et al., 2001 |
|
Enterovirus 74 (EV-74)
|
| EV-74 |
W553-130/99 |
VP1 |
864 |
AY208118 |
Norder et al., 2003 |
|
| EV-74 |
USA/CA75-10213 |
CG |
7410 |
AY556057 |
Oberste et al., 2004 |
|
Enterovirus 75 (EV-75)
|
| EV-75 |
OK85-6388* |
VP1(p) |
427 |
AF152280 |
Oberste et al., 2000 |
|
| EV-75 |
CT87-7122 |
VP1(p) |
427 |
AF152254 |
Oberste et al., 2000 |
|
| EV-75 |
CT87-7123 |
VP1(p) |
427 |
AF152255 |
Oberste et al., 2000 |
|
| EV-75 |
VA86-6765 |
VP1 |
929 |
AF152298 |
Oberste et al., 2000 |
|
| EV-75 |
FJ96-71 (China) |
VP1 |
933 |
AY570801 |
Yang et al., unpublished |
|
| EV-75 |
USA/OK85-10362 |
CG |
7429 |
AY556070 |
Oberste et al., 2004 |
|
Enterovirus 77 (EV-77)
|
| EV-77 |
Lafeuille; W543-122/99 |
VP1 |
867 |
AY208119 |
Norder et al., 2003 |
|
| EV-77 |
CF496-99 |
CG |
7415 |
AJ493062 |
Bailly et al.,
2004 |
|
Enterovirus 78 (EV-78)
|
| EV-78 |
Agius; W137-126/99 |
VP1 |
852 |
AY208120 |
Norder et al., 2003 |
|
|
EV-78 |
Agius; W137-126/99* |
P1 |
2574 |
AY208120 |
Norder et al., 2003 |
|
Enterovirus 79 (EV-79)
|
|
EV-79 |
USA/CA79-10244 |
VP1 |
|
n/a |
Oberste et al.,
2007 |
|
|
EV-79 |
USA/CA82-10385 |
P1 |
2580 |
AY843309 |
Oberste et al.,
2007 |
|
|
EV-79 |
USA/CA79-10384* |
CG |
7430 |
AY843297 |
Oberste et al.,
2007 |
|
| EV79 |
NH95-0601 |
CG |
7427 |
AB426610 |
Yamashita et al., unpublished |
|
Enterovirus 80 (EV-80)
|
|
EV-80 |
USA/CA67-10246 |
VP1 |
|
n/a |
Oberste et al.,
2007 |
|
|
EV-80 |
OMA98-10388 |
P1 |
2616 |
AY843310 |
Oberste et al.,
2007 |
|
|
EV-80 |
USA/CA67-10387* |
CG |
7428 |
AY843298 |
Oberste et al.,
2007 |
|
Enterovirus 81 (EV-81)
|
|
EV-81 |
USA/CA68-10248 |
VP1 |
|
n/a |
Oberste et al.,
2007 |
|
|
EV-81 |
USA/CA68-10389* |
CG |
7415 |
AY843299 |
Oberste et al.,
2007 |
|
Enterovirus 82 (EV-82)
|
|
EV-82 |
USA/CA74-10249 |
VP1 |
|
n/a |
Oberste et al.,
2007 |
|
|
EV-82 |
OMA98-10391 |
P1 |
2583 |
AY843311 |
Oberste et al.,
2007 |
|
|
EV-82 |
USA/CA64-10390* |
CG |
7427 |
AY843300 |
Oberste et al.,
2007 |
|
Enterovirus 83 (EV-83)
|
|
EV-83 |
USA/CA76-10251 |
VP1 |
|
n/a |
Oberste et al.,
2007 |
|
|
EV-83 |
USA/CA76-10392* |
CG |
7394 |
AY843301 |
Oberste et al.,
2007 |
|
|
EV-83 |
10505 |
partial VP1 |
310 |
AY919489 |
Oberste et al.,
2006 |
|
|
EV-83 |
10506 |
partial VP1 |
308 |
AY919490 |
Oberste et al.,
2006 |
|
|
EV-83 |
10574 |
partial VP1 |
309 |
AY919565 |
Oberste et al.,
2006 |
|
Enterovirus 84 (EV-84)
|
|
EV-84 |
CIV2003-10603* |
CG |
7423 |
DQ902712 |
Oberste et al.,
2007 |
|
Enterovirus 85 (EV-85)
|
|
EV-85 |
BAN00-10353* |
CG |
7418 |
AY843303 |
Oberste et al.,
2007 |
|
Enterovirus 86 (EV-86)
|
|
EV-86 |
BAN00-10354* |
CG |
7400 |
AY843304 |
Oberste et al.,
2007 |
|
|
EV-86 |
BAN99-10356 |
P1 |
2553 |
AY843312 |
Oberste et al.,
2007 |
|
|
EV-86 |
10458b |
partial VP1 |
496 |
AY919444 |
Oberste et al.,
2006 |
|
Enterovirus 87 (EV-87)
|
|
EV-87 |
BAN00-10256 |
VP1 |
|
n/a |
Oberste et al.,
2007 |
|
|
EV-87 |
BAN01-10396* |
CG |
7422 |
AY843305 |
Oberste et al.,
2007 |
|
Enterovirus 88 (EV-88)
|
|
EV-88 |
BAN01-10258 |
VP1 |
|
n/a |
Oberste et al.,
2007 |
|
|
EV-88 |
BAN01-10398* |
CG |
7433 |
AY843306 |
Oberste et al.,
2007 |
|
Enterovirus 93 (EV-93)
|
|
EV-93 |
38-03*
(DR Congo) |
VP3(p)+VP1+2A(p) |
1263 |
EF127244 |
Junttila et al., 2007 |
|
|
EV-93 |
39-03 |
VP3(p)+VP1+2A(p) |
1263 |
EF127243 |
Junttila et al., 2007 |
|
|
EV-93 |
40-03 |
VP3(p)+VP1+2A(p) |
1247 |
EF127242 |
Junttila et al., 2007 |
|
Enterovirus 97 (EV-97)
|
|
EV-97 |
FIN03-2875 |
VP1 |
858 |
EF364397 |
Smura et al., 2007 |
|
|
EV-97 |
BAN99-10355* |
CG |
7413 |
AY843307 |
Oberste et al., 2007 |
|
|
EV-97 |
10533b |
VP1 |
417 |
AY919521 |
Oberste et al., 2006 |
|
|
EV-97 |
10570b |
VP1 |
858 |
AY919561 |
Oberste et al., 2006 |
|
|
EV-97 |
DT94-0227 |
CG |
7413 |
AB426611 |
Yamashita et al., unpublished |
|
Enterovirus 98 (EV-98)
|
|
EV-98 |
T92-1499 |
CG |
7422 |
AB426608 |
Yamashita et al., unpublished |
|
Enterovirus 100 (EV-100)
|
|
EV-100 |
BAN00-10410 |
VP1 |
|
n/a |
Oberste et al., 2007 |
|
|
EV-100 |
BAN2000-10500* |
CG |
7421 |
DQ902713 |
Oberste et al., 2007 |
|
| VP1 |
867 |
AY919484 |
Oberste
et al.,
2006 |
|
Enterovirus 101 (EV-101)
|
| EV-101 |
CIV03-10361* |
CG |
7445 |
AY843308 |
Oberste
et al.,
2007 |
|
Enterovirus 106 (EV-106)
|
| EV-106 |
BAN2001-10634* |
VP1 |
|
N/A |
Oberste et al., unpublished |
|
Enterovirus 107 (EV-107)
|
| EV-107 |
TN94-0349* |
CG |
7423 |
AB426609 |
Yamashita et al., unpublished |
|
| EV-107 |
PAK5443 (Pakistan, July 2008) |
VP3+VP1+2A |
1266 |
GQ292714 |
Asif, unpub. |
|
Simian agent 5 (SA5)
|
| SA5 |
B165 |
5'NCR(p) |
319 |
N/A |
N.J. Knowles and F. Lin, unpublished data |
|
| CG |
7378 |
AF326751 |
Oberste et al, 2002; Oberste et al, 2007 |
|
| 3D(p) |
447 |
N/A |
N.J. Knowles and F. Lin, unpublished data |
|
Unclassified enterovirus isolated from pigs
|
| ??? |
T75 (Tambov region, Russia, 1975) |
3D |
1498
|
AJ245864 |
Lomakina, N.F., Scherbakova, L.O.,
Lomakin, A.I., and Drygin V.V., unpublished |
|
CG, CG
(p), partial gene sequence
*, prototype strain |
References
|
|