HRV-B seqs

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Genus: Rhinovirus

Species: Human rhinovirus B

Serotype: Human rhinovirus 3 (HRV-3)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 4 (HRV-4)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 5 (HRV-5)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 6 (HRV-6)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 14 (HRV-14)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 17 (HRV-17)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 26 (HRV-26)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 27 (HRV-27)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 35 (HRV-35)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 37 (HRV-37)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 42 (HRV-42)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 48 (HRV-48)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 52 (HRV-52)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 69 (HRV-69)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 70 (HRV-70)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 72 (HRV-72)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 79 (HRV-79)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 83 (HRV-83)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 84 (HRV-84)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 86 (HRV-86)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 91 (HRV-91)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 92 (HRV-92)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 93 (HRV-93)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 97 (HRV-97)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Human rhinovirus 99 (HRV-99)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
     

(White areas indicate genes which haven't yet been sequenced completely; grey areas are where only partial sequences exist)

References

Serotypes: HRV-3, 4, 5, 6, 14, 17, 26, 27, 35, 37, 42, 48, 52, 69, 70, 72, 79, 83, 84, 86, 91, 92, 93, 97, 99.

Virus Strain Region Length Accession No. Reference Comments

Human rhinovirus 3 (HRV-3)

HRV-3 FEB CG 7208 DQ473485 Kistler et al., 2007  
CG 7211 EF173422 Tapparel et al., 2007  
VP2(p) 327 Z47573 Horsnell et al., 1995  
VP4+VP2(p) 420 AY016403 Savolainen et al., 2002  
P1 2565 U60874 Zhao et al., 1996  
VP1 864 AY355184 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1396 AY450526 Laine et al., unpub.
3D(p) 468 AY436702 Savolainen et al., unpublished  

Human rhinovirus 4 (HRV-4)

HRV-4 16/60 CG 7212 DQ473490 Kistler et al., 2007  
VP4+VP2(p) 420 AF343655 Savolainen et al., 2002  
VP1 864 AY355185 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1384 AY450527 Laine et al., unpub.

Human rhinovirus 5 (HRV-5)

HRV-5 Norman VP4+VP2(p) 420 AF343651 Savolainen et al., 2002  
VP1 864 AY355186 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1396 AY450528 Laine et al., unpub.

Human rhinovirus 6 (HRV-6)

HRV-6 Thompson CG 7216 DQ473486 Kistler et al., 2007  
VP4+VP2(p) 420 AY016402 Savolainen et al., 2002  
VP1 867 AY355187 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1411 AY450529 Laine et al., unpub.
3D(p) 468 AY436698 Savolainen et al., unpublished  

Human rhinovirus 14 (HRV-14)

HRV-14 1059 (South Carolina/59) CG 7212 K02121 Stanway et al., 1984  
K01087 Callahan et al., 1985  
L05355 Lee et al., 1993  
VP1 867 AY355195 Ledford et al., unpub.

Human rhinovirus 17 (HRV-17)

HRV-17 33342 (North Carolina/59) CG 7219 EF173420 Tapparel et al., 2007  
5'UTR(p) 255 Z29655 Mori and Clewley, 1994  
VP4+VP2(p) 420 AF343645 Savolainen et al., 2002  
VP1 888 AY355198 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1432 AY450530 Laine et al., unpub.
3D(p) 468 AY436687 Savolainen et al., unpublished  

Human rhinovirus 26 (HRV-26)

HRV-26 5660-CV27 VP4+VP2(p) 420 AF343653 Savolainen et al., 2002  
VP1 861 AY355207 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1364 AY450531 Laine et al., unpub.
3D(p) 468 AY436703 Savolainen et al., unpublished  

Human rhinovirus 27 (HRV-27)

HRV-27 5870-CV28 CG 7217 EF173421 Tapparel et al., 2007  
VP4+VP2(p) 420 AF343654 Savolainen et al., 2002  
VP1 861 AY355208 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1384 AY450532 Laine et al., unpub.

Human rhinovirus 35 (HRV-35)

HRV-35 164A CG 7224 DQ473487 Kistler et al., 2007  
VP4+VP2(p) 420 AY040241 Savolainen et al., 2002  
VP1 864 AY355216 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1411 AY450533 Laine et al., unpub.

Human rhinovirus 37 (HRV-37)

HRV-37 151-1 CG 7216 EF173423 Tapparel et al., 2007  
VP4+VP2(p) 420 AY016401 Savolainen et al., 2002  
VP1 864 AY355218 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1413 AY450534 Laine et al., unpub.
3D(p) 468 AY436700 Savolainen et al., unpublished  

Human rhinovirus 42 (HRV-42)

HRV-42 56822 (North Carolina/61) VP4+VP2(p) 420 AY016404 Savolainen et al., 2002  
VP1 864 AY355223 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1388 AY450535 Laine et al., unpub.

Human rhinovirus 48 (HRV-48)

HRV-48 1505 CG 7214 DQ473488 Kistler et al., 2007  
VP4+VP2(p) 420 AY016400 Savolainen et al., 2002  
VP1 882 AY355229 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1428 AY450536 Laine et al., unpub.

Human rhinovirus 52 (HRV-52)

HRV-52 F01-3772 CG 7216 EF173424 Tapparel et al., 2007  
VP4+VP2(p) 420 AY016398 Savolainen et al., 2002  
VP1 879 AY355233 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1388 AY450537 Laine et al., unpub.
3D(p) 468 AY436693 Savolainen et al., unpublished  

Human rhinovirus 69 (HRV-69)

HRV-69 F02-2513-Mitchinson 5'UTR(p) 257 Z29663 Mori and Clewley, 1994  
VP4+VP2(p) 420 AY016399 Savolainen et al., 2002  
VP1 879 AY355250 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1400 AY450538 Laine et al., unpub.
3D(p) 468 AY436692 Savolainen et al., unpublished  

Human rhinovirus 70 (HRV-70)

HRV-70 F02-2547-Treganza CG 7223 DQ473489 Kistler et al., 2007  
5'UTR(p) 249 Z29664 Mori and Clewley, 1994  
VP4+VP2(p) 420 AF343646 Savolainen et al., 2002  
VP1 888 AY355251 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1393 AY450539 Laine et al., unpub.
3D(p) 468 AY436686 Savolainen et al., unpublished  

Human rhinovirus 72 (HRV-72)

HRV-72 K2207 VP2(p) 327 Z47574 Horsnell et al., 1995  
VP4+VP2(p) 420 AF343650 Savolainen et al., 2002  
VP1 867 AY355253 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1407 AY450540 Laine et al., unpub.
3D(p) 468 AY436697 Savolainen et al., unpublished  

Human rhinovirus 79 (HRV-79)

HRV-79 101-1 VP4+VP2(p) 420 AF343649 Savolainen et al., 2002  
VP1 864 AY355260 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1378 AY450541 Laine et al., unpub.

Human rhinovirus 83 (HRV-83)

HRV-83 Baylor 7 VP4+VP2(p) 420 AF343647 Savolainen et al., 2002  
VP1 867 AY355264 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1377 AY450542 Laine et al., unpub.

Human rhinovirus 84 (HRV-84)

HRV-84 432D VP4+VP2(p) 420 AY040240 Savolainen et al., 2002  
VP1 861 AY355265 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1356 AY450543 Laine et al., unpub.

Human rhinovirus 86 (HRV-86)

HRV-86 121564-Johnson VP4+VP2(p) 420 AF343648 Savolainen et al., 2002  
VP1 864 AY355267 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1169 AY450544 Laine et al., unpub.
3D(p) 468 AY436695 Savolainen et al., unpublished  

Human rhinovirus 91 (HRV-91)

HRV-91 JM1 VP4+VP2(p) 420 AY040237 Savolainen et al., 2002  
VP1 888 AY355272 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1410 AY450545 Laine et al., unpub.

Human rhinovirus 92 (HRV-92)

HRV-92 SF-1662 VP4+VP2(p) 420 AY040238 Savolainen et al., 2002  
VP1 867 AY355273 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1392 AY450546 Laine et al., unpub.

Human rhinovirus 93 (HRV-93)

HRV-93 SF-1492 CG 7215 EF173425 Tapparel et al., 2007  
VP4+VP2(p) 420 AY040239 Savolainen et al., 2002  
VP1 861 AY355274 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1370 AY450547 Laine et al., unpub.

Human rhinovirus 97 (HRV-97)

HRV-97 SF-1372 VP4+VP2(p) 420 AY040242 Savolainen et al., 2002  
VP1 861 AY355278 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1377 AY450548 Laine et al., unpub.

Human rhinovirus 99 (HRV-99)

HRV-99 604 VP4+VP2(p) 420 AF343652 Savolainen et al., 2002  
VP1 864 AY355280 Ledford et al., unpub.
VP3(p)+VP1+2A(p) 1220 AY450549 Laine et al., unpub.
3D(p) 468 AY436704 Savolainen et al., unpublished  

Untyped isolates
HRV-B sp. NY-077 (1081) VP4 201 DQ875922 Lamson et al., 2006  
HRV-B sp. NY-1083 (2003) VP4 201 DQ875927 Lamson et al., 2006  
HRV-B sp. NY-045 (1048) VP4 201 DQ875930 Lamson et al., 2006  
             
CG = complete genome
(p) = partial gene sequence

References

 

 
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