| |
Genus: Enterovirus
Species: Human rhinovirus C
No (sero)types yet defined
| Serotype: human rhinovirus ? (HRV-?) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| |
|
|
(White areas indicate genes which haven't yet been
sequenced completely; grey areas are where only partial sequences
exist)
References
Serotypes: HRV-? (multiple serotypes probably exist) |
| Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
Human rhinovirus ? (HRV-?) |
| HRV-? |
QPM (Australia) |
CG |
6948 |
EF186077 |
McErlean et al., 2007 |
~200 nt missing from 5' end. |
|
HRV-? |
QPM-001 |
VP4 |
198 |
EF512632 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512649 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512666 |
McErlean et al., 2007 |
|
|
HRV-? |
QPM-002 |
VP4 |
198 |
EF512633 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512663 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512667 |
McErlean et al., 2007 |
|
|
HRV-? |
QPM-003 |
VP4 |
198 |
EF512639 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512655 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512678 |
McErlean et al., 2007 |
|
|
HRV-? |
QPM-004 |
VP4 |
198 |
EF512643 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512653 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512670 |
McErlean et al., 2007 |
|
|
HRV-? |
QPM-005 |
VP4 |
198 |
EF512642 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512665 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512668 |
McErlean et al., 2007 |
|
|
HRV-? |
QPM-006 |
VP4 |
198 |
EF512644 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512654 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512673 |
McErlean et al., 2007 |
|
|
HRV-? |
QPM-007 |
VP4 |
198 |
EF512634 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512657 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512669 |
McErlean et al., 2007 |
|
|
HRV-? |
QPM-008 |
VP4 |
198 |
EF512636 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512652 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512680 |
McErlean et al., 2007 |
|
|
HRV-? |
QPM-009 |
VP4 |
198 |
EF512648 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512664 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512682 |
McErlean et al., 2007 |
|
|
HRV-? |
QPM-010 |
VP4 |
198 |
EF512646 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512659 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512672 |
McErlean et al., 2007 |
|
|
HRV-? |
QPM-011 |
VP4 |
198 |
EF512637 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512650 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512671 |
McErlean et al., 2007 |
|
|
HRV-? |
QPM-012 |
VP4 |
198 |
EF512641 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512651 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512675 |
McErlean et al., 2007 |
|
|
HRV-? |
QPM-013 |
VP4 |
198 |
EF512640 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512656 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512679 |
McErlean et al., 2007 |
|
|
HRV-? |
QPM-014 |
VP4 |
198 |
EF512647 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512660 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512681 |
McErlean et al., 2007 |
|
|
HRV-? |
QPM-015 |
VP4 |
198 |
EF512645 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512662 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512674 |
McErlean et al., 2007 |
|
|
HRV-? |
QPM-016 |
VP4 |
198 |
EF512635 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512658 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512677 |
McErlean et al., 2007 |
|
|
HRV-? |
QPM-17 |
VP4 |
198 |
EF512638 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512661 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512676 |
McErlean et al., 2007 |
|
| HRV-? |
NY-041 (1044) |
VP4 |
201 |
DQ875921 |
Lamson et al., 2006 |
|
| HRV-? |
NY-063 (1067) |
VP4 |
201 |
DQ875924 |
Lamson et al., 2006 |
|
| HRV-? |
NY-1085 (2005) |
VP4 |
201 |
DQ875925 |
Lamson et al., 2006 |
|
| HRV-? |
NY-042 (1045) |
VP4 |
201 |
DQ875926 |
Lamson et al., 2006 |
|
| HRV-? |
NY-060 (1064) |
VP4 |
201 |
DQ875928 |
Lamson et al., 2006 |
|
| HRV-? |
NY-003 (1003) |
VP4 |
201 |
DQ875929 |
Lamson et al., 2006 |
|
| HRV-? |
NY-028 (1031) |
VP4 |
201 |
DQ875931 |
Lamson et al., 2006 |
|
| HRV-? |
NY-074 (1078) |
CG |
7072 |
DQ875932 |
Lamson et al., 2006;
Briese et al., unpub. |
|
| HRV-? |
NAT009 |
VP4/VP2(p) |
|
EF077237 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT018 |
VP4/VP2(p) |
|
EF077238 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT051 |
VP4/VP2(p) |
|
EF077239 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT028 |
VP4/VP2(p) |
|
EF077240 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT021 |
VP4/VP2(p) |
|
EF077241 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT038 |
VP4/VP2(p) |
|
EF077242 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT040 |
VP4/VP2(p) |
|
EF077243 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT046 |
VP4/VP2(p) |
|
EF077244 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT053 |
VP4/VP2(p) |
|
EF077245 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT047 |
VP4/VP2(p) |
|
EF077246 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT049 |
VP4/VP2(p) |
|
EF077247 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT025 |
VP4/VP2(p) |
|
EF077248 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT026 |
VP4/VP2(p) |
|
EF077249 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT008 |
VP4/VP2(p) |
|
EF077250 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT023 |
VP4/VP2(p) |
|
EF077251 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT001 |
VP4/VP2(p) |
|
EF077252 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT045 |
VP4/VP2(p) |
|
EF077253 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT063 |
VP4/VP2(p) |
|
EF077254 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT065 |
VP4/VP2(p) |
|
EF077255 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT069 |
VP4/VP2(p) |
|
EF077256 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT080 |
VP4/VP2(p) |
|
EF077257 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT087 |
VP4/VP2(p) |
|
EF077258 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT088 |
VP4/VP2(p) |
|
EF077259 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT059 |
VP4/VP2(p) |
|
EF077260 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT060 |
VP4/VP2(p) |
|
EF077261 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT066 |
VP4/VP2(p) |
|
EF077262 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT070 |
VP4/VP2(p) |
|
EF077263 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT083 |
VP4/VP2(p) |
|
EF077264 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT084 |
VP4/VP2(p) |
|
EF077265 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT057 |
VP4/VP2(p) |
|
EF077266 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT061 |
VP4/VP2(p) |
|
EF077267 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT062 |
VP4/VP2(p) |
|
EF077268 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT089 |
VP4/VP2(p) |
|
EF077269 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT024 |
VP4/VP2(p) |
446 |
EF077270 |
Kistler
et al., 2007 |
|
| HRV-? |
NAT001 |
CG |
6944 |
EF077279 |
Kistler
et al., 2007 |
bases missing from 5' end |
| HRV-? |
NAT045 |
CG |
7015 |
EF077280 |
Kistler
et al., 2007 |
bases missing from 5' end |
| HRV-? |
NAT037 |
VP4/VP2(p) |
561 |
EF077281 |
Kistler
et al., 2007 |
|
| HRV-? |
024 (Hong Kong) |
CG |
7099 |
EF582385 |
Lau et al., 2007 |
|
| HRV-? |
025 (Hong Kong) |
CG |
7114 |
EF582386 |
Lau et al., 2007 |
|
| HRV-? |
026 (Hong Kong) |
CG |
7086 |
EF582387 |
Lau et al., 2007 |
|
| HRV-? |
N4 (China 2006) |
CG |
7107 |
GQ223227 |
Huang et al., 2009 |
|
| HRV-? |
N10 (China 2007) |
CG |
7111 |
GQ223228 |
Huang et al., 2009 |
|
| HRV-? |
026-001 (Aus, 2002) |
VP1 |
825 |
EU935601 |
Faux et al., unpub. |
|
| HRV-? |
QCE (Aus, 2003) |
VP1 |
831 |
EU935600 |
Faux et al., unpub. |
|
| CG |
7010 |
GQ323774 |
Arden et al., unpub. |
|
| HRV-? |
QIM-001 |
VP1(p) |
714 |
FJ770372 |
Faux & Mackay, unpub. |
|
| HRV-? |
CL-Fnp5 (Swi, 2003) |
VP4-VP1 |
3055 |
EU840728 |
Tapparel et al., 2009a |
|
| HRV-? |
CL-170085 (Swi-2008) |
VP1 |
775 |
FJ392317 |
Tapparel et al., 2009b |
|
| CG |
7108 |
EU840952 |
Tapparel et al., 2009a,b |
|
| |
|
|
|
|
|
|
CG = complete
genome
(p) = partial gene sequence |
References
Arden, K.E., Faux, C.E., O'Neill, N., McErlean, P., Lambert,
S.B., Nissen, M.D., Sloots, T.P. and Mackay, I.M. Molecular and clinical
characterization of human rhinovirus (HRV) QCE, a novel HRV C strain detected
predominantly in children with wheeze during 2003. Unpublished.
Faux, C.E., Lambert, S.B., Nissen, M.D., Sloots, T.P. and
Mackay, I.M. Molecular and clinical features of HRV-C026 [AUS/2002] variants
detected in Australian children. Unpublished.
Huang, T., Wang, W., Bessaud, M., Ren, P., Sheng, J., Yan,
H.J., Zhang, J., Lin, X., Wang, Y.J., Delpeyroux, F. and Deubel, V. (2009).
Evidence of recombination and genetic diversity in human rhinoviruses in
children with acute respiratory infection. PLoS ONE 4 (7), E6355.
Kistler, A., Avila, P.C., Rouskin, S., Wang, D., Ward, T.,
Yagi, S., Schnurr, D., Ganem, D., Derisi, J.L. and Boushey, H.A. (2007).
Pan-viral screening of respiratory tract infections in adults with and without
asthma reveals unexpected human coronavirus and human rhinovirus diversity. J.
Infect. Dis. 196(6):817-825.
Lamson, D., Renwick, N., Kapoor, V., Liu, Z., Palacios, G., Ju,
J., Dean, A., St George, K., Briese, T. and Ian Lipkin, W. (2006). MassTag polymerase-chain-reaction
detection of respiratory pathogens, including a new
rhinovirus genotype, that caused influenza-like illness in New York State during
2004-2005. J. Infect. Dis. 194: 1398-1402.
Lau, S.K., Yip, C.C., Tsoi, H.W., Lee, R.A., So, L.Y., Lau,
Y.L., Chan, K.H., Woo, P.C. and Yuen, K.Y. (2007). Clinical features and
complete genome characterization of a distinct human rhinovirus (HRV) genetic
cluster, probably representing a previously undetected HRV species, HRV-C,
associated with acute respiratory illness in children. J. Clin. Microbiol. 45:
3655-3664.
McErlean, P., Shackelton, L.A., Lambert, S.B., Nissen, M.D.,
Sloots, T.P. and Mackay, I.M. (2007). Characterisation of a newly identified
human rhinovirus, HRV-QPM, discovered in infants with bronchiolitis. J. Clin.
Virol. 39: 67-75.
Tapparel, C., Junier, T., Gerlach, D., Van-Belle, S., Turin,
L., Cordey, S., Muhlemann, K., Regamey, N., Aubert, J.D., Soccal, P.M.,
Eigenmann, P., Zdobnov, E. and Kaiser, L. (2009a). New respiratory enterovirus
and recombinant rhinoviruses among circulating picornaviruses. Emerging Infect.
Dis. 15: 719-726.
Tapparel, C., L'Huillier, A.G., Rougemont, A.L., Beghetti,
M., Barazzone-Argiroffo, C. and Kaiser, L. (2009b). Pneumonia and pericarditis
in a child with HRV-C infection: a case report. J. Clin. Virol. 45: 157-160. |