HRV-C seqs

Child level

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Genus: Enterovirus

Species: Human rhinovirus C

No (sero)types yet defined

Serotype: human rhinovirus ? (HRV-?)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
     

(White areas indicate genes which haven't yet been sequenced completely; grey areas are where only partial sequences exist)

References

Serotypes: HRV-? (multiple serotypes probably exist)

Virus Strain Region Length Accession No. Reference Comments

Human rhinovirus ? (HRV-?)

HRV-? QPM (Australia) CG 6948 EF186077 McErlean et al., 2007 ~200 nt missing from 5' end.
HRV-? QPM-001 VP4 198 EF512632 McErlean et al., 2007  
VP2 790 EF512649 McErlean et al., 2007  
VP1 825 EF512666 McErlean et al., 2007  
HRV-? QPM-002 VP4 198 EF512633 McErlean et al., 2007  
VP2 790 EF512663 McErlean et al., 2007  
VP1 825 EF512667 McErlean et al., 2007  
HRV-? QPM-003 VP4 198 EF512639 McErlean et al., 2007  
VP2 790 EF512655 McErlean et al., 2007  
VP1 825 EF512678 McErlean et al., 2007  
HRV-? QPM-004 VP4 198 EF512643 McErlean et al., 2007  
VP2 790 EF512653 McErlean et al., 2007  
VP1 825 EF512670 McErlean et al., 2007  
HRV-? QPM-005 VP4 198 EF512642 McErlean et al., 2007  
VP2 790 EF512665 McErlean et al., 2007  
VP1 825 EF512668 McErlean et al., 2007  
HRV-? QPM-006 VP4 198 EF512644 McErlean et al., 2007  
VP2 790 EF512654 McErlean et al., 2007  
VP1 825 EF512673 McErlean et al., 2007  
HRV-? QPM-007 VP4 198 EF512634 McErlean et al., 2007  
VP2 790 EF512657 McErlean et al., 2007  
VP1 825 EF512669 McErlean et al., 2007  
HRV-? QPM-008 VP4 198 EF512636 McErlean et al., 2007  
VP2 790 EF512652 McErlean et al., 2007  
VP1 825 EF512680 McErlean et al., 2007  
HRV-? QPM-009 VP4 198 EF512648 McErlean et al., 2007
VP2 790 EF512664 McErlean et al., 2007  
VP1 825 EF512682 McErlean et al., 2007  
HRV-? QPM-010 VP4 198 EF512646 McErlean et al., 2007  
VP2 790 EF512659 McErlean et al., 2007
VP1 825 EF512672 McErlean et al., 2007  
HRV-? QPM-011 VP4 198 EF512637 McErlean et al., 2007  
VP2 790 EF512650 McErlean et al., 2007  
VP1 825 EF512671 McErlean et al., 2007  
HRV-? QPM-012 VP4 198 EF512641 McErlean et al., 2007  
VP2 790 EF512651 McErlean et al., 2007  
VP1 825 EF512675 McErlean et al., 2007  
HRV-? QPM-013 VP4 198 EF512640 McErlean et al., 2007  
VP2 790 EF512656 McErlean et al., 2007  
VP1 825 EF512679 McErlean et al., 2007  
HRV-? QPM-014 VP4 198 EF512647 McErlean et al., 2007  
VP2 790 EF512660 McErlean et al., 2007  
VP1 825 EF512681 McErlean et al., 2007  
HRV-? QPM-015 VP4 198 EF512645 McErlean et al., 2007  
VP2 790 EF512662 McErlean et al., 2007  
VP1 825 EF512674 McErlean et al., 2007  
HRV-? QPM-016 VP4 198 EF512635 McErlean et al., 2007  
VP2 790 EF512658 McErlean et al., 2007  
VP1 825 EF512677 McErlean et al., 2007  
HRV-? QPM-17 VP4 198 EF512638 McErlean et al., 2007  
VP2 790 EF512661 McErlean et al., 2007  
VP1 825 EF512676 McErlean et al., 2007  
HRV-? NY-041 (1044) VP4 201 DQ875921 Lamson et al., 2006  
HRV-? NY-063 (1067) VP4 201 DQ875924 Lamson et al., 2006  
HRV-? NY-1085 (2005) VP4 201 DQ875925 Lamson et al., 2006  
HRV-? NY-042 (1045) VP4 201 DQ875926 Lamson et al., 2006  
HRV-? NY-060 (1064) VP4 201 DQ875928 Lamson et al., 2006  
HRV-? NY-003 (1003) VP4 201 DQ875929 Lamson et al., 2006  
HRV-? NY-028 (1031) VP4 201 DQ875931 Lamson et al., 2006  
HRV-? NY-074 (1078) CG 7072 DQ875932 Lamson et al., 2006;
Briese et al., unpub.
 
HRV-? NAT009 VP4/VP2(p)   EF077237 Kistler et al., 2007  
HRV-? NAT018 VP4/VP2(p)   EF077238 Kistler et al., 2007  
HRV-? NAT051 VP4/VP2(p)   EF077239 Kistler et al., 2007  
HRV-? NAT028 VP4/VP2(p)   EF077240 Kistler et al., 2007  
HRV-? NAT021 VP4/VP2(p)   EF077241 Kistler et al., 2007  
HRV-? NAT038 VP4/VP2(p)   EF077242 Kistler et al., 2007  
HRV-? NAT040 VP4/VP2(p)   EF077243 Kistler et al., 2007  
HRV-? NAT046 VP4/VP2(p)   EF077244 Kistler et al., 2007  
HRV-? NAT053 VP4/VP2(p)   EF077245 Kistler et al., 2007  
HRV-? NAT047 VP4/VP2(p)   EF077246 Kistler et al., 2007  
HRV-? NAT049 VP4/VP2(p)   EF077247 Kistler et al., 2007  
HRV-? NAT025 VP4/VP2(p)   EF077248 Kistler et al., 2007  
HRV-? NAT026 VP4/VP2(p)   EF077249 Kistler et al., 2007  
HRV-? NAT008 VP4/VP2(p)   EF077250 Kistler et al., 2007  
HRV-? NAT023 VP4/VP2(p)   EF077251 Kistler et al., 2007  
HRV-? NAT001 VP4/VP2(p)   EF077252 Kistler et al., 2007  
HRV-? NAT045 VP4/VP2(p)   EF077253 Kistler et al., 2007  
HRV-? NAT063 VP4/VP2(p)   EF077254 Kistler et al., 2007  
HRV-? NAT065 VP4/VP2(p)   EF077255 Kistler et al., 2007  
HRV-? NAT069 VP4/VP2(p)   EF077256 Kistler et al., 2007
HRV-? NAT080 VP4/VP2(p)   EF077257 Kistler et al., 2007  
HRV-? NAT087 VP4/VP2(p)   EF077258 Kistler et al., 2007  
HRV-? NAT088 VP4/VP2(p)   EF077259 Kistler et al., 2007  
HRV-? NAT059 VP4/VP2(p)   EF077260 Kistler et al., 2007
HRV-? NAT060 VP4/VP2(p)   EF077261 Kistler et al., 2007  
HRV-? NAT066 VP4/VP2(p)   EF077262 Kistler et al., 2007  
HRV-? NAT070 VP4/VP2(p)   EF077263 Kistler et al., 2007  
HRV-? NAT083 VP4/VP2(p)   EF077264 Kistler et al., 2007
HRV-? NAT084 VP4/VP2(p)   EF077265 Kistler et al., 2007
HRV-? NAT057 VP4/VP2(p)   EF077266 Kistler et al., 2007  
HRV-? NAT061 VP4/VP2(p)   EF077267 Kistler et al., 2007  
HRV-? NAT062 VP4/VP2(p)   EF077268 Kistler et al., 2007  
HRV-? NAT089 VP4/VP2(p)   EF077269 Kistler et al., 2007
HRV-? NAT024 VP4/VP2(p) 446 EF077270 Kistler et al., 2007
HRV-? NAT001 CG 6944 EF077279 Kistler et al., 2007 bases missing from 5' end
HRV-? NAT045 CG 7015 EF077280 Kistler et al., 2007 bases missing from 5' end
HRV-? NAT037 VP4/VP2(p) 561 EF077281 Kistler et al., 2007  
HRV-? 024 (Hong Kong) CG 7099 EF582385 Lau et al., 2007  
HRV-? 025 (Hong Kong) CG 7114 EF582386 Lau et al., 2007  
HRV-? 026 (Hong Kong) CG 7086 EF582387 Lau et al., 2007  
HRV-? N4 (China 2006) CG 7107 GQ223227 Huang et al., 2009  
HRV-? N10 (China 2007) CG 7111 GQ223228 Huang et al., 2009  
HRV-? 026-001 (Aus, 2002) VP1 825 EU935601 Faux et al., unpub.  
HRV-? QCE (Aus, 2003) VP1 831 EU935600 Faux et al., unpub.  
CG 7010 GQ323774 Arden et al., unpub.  
HRV-? QIM-001 VP1(p) 714 FJ770372 Faux & Mackay, unpub.  
HRV-? CL-Fnp5 (Swi, 2003) VP4-VP1 3055 EU840728 Tapparel et al., 2009a  
HRV-? CL-170085 VP1 775 FJ392317 Tapparel et al., 2009b  
             
CG = complete genome
(p) = partial gene sequence

References

Arden, K.E., Faux, C.E., O'Neill, N., McErlean, P., Lambert, S.B., Nissen, M.D., Sloots, T.P. and Mackay, I.M. Molecular and clinical characterization of human rhinovirus (HRV) QCE, a novel HRV C strain detected predominantly in children with wheeze during 2003. Unpublished.

Faux, C.E., Lambert, S.B., Nissen, M.D., Sloots, T.P. and Mackay, I.M. Molecular and clinical features of HRV-C026 [AUS/2002] variants detected in Australian children. Unpublished.

Huang, T., Wang, W., Bessaud, M., Ren, P., Sheng, J., Yan, H.J., Zhang, J., Lin, X., Wang, Y.J., Delpeyroux, F. and Deubel, V. (2009). Evidence of recombination and genetic diversity in human rhinoviruses in children with acute respiratory infection. PLoS ONE 4 (7), E6355.

Kistler, A., Avila, P.C., Rouskin, S., Wang, D., Ward, T., Yagi, S., Schnurr, D., Ganem, D., Derisi, J.L. and Boushey, H.A. (2007). Pan-viral screening of respiratory tract infections in adults with and without asthma reveals unexpected human coronavirus and human rhinovirus diversity. J. Infect. Dis. 196(6):817-825.

Lamson, D., Renwick, N., Kapoor, V., Liu, Z., Palacios, G., Ju, J., Dean, A., St George, K., Briese, T. and Ian Lipkin, W. (2006). MassTag polymerase-chain-reaction detection of respiratory pathogens, including a new rhinovirus genotype, that caused influenza-like illness in New York State during 2004-2005. J. Infect. Dis. 194: 1398-1402.

Lau, S.K., Yip, C.C., Tsoi, H.W., Lee, R.A., So, L.Y., Lau, Y.L., Chan, K.H., Woo, P.C. and Yuen, K.Y. (2007). Clinical features and complete genome characterization of a distinct human rhinovirus (HRV) genetic cluster, probably representing a previously undetected HRV species, HRV-C, associated with acute respiratory illness in children. J. Clin. Microbiol. 45: 3655-3664.

McErlean, P., Shackelton, L.A., Lambert, S.B., Nissen, M.D., Sloots, T.P. and Mackay, I.M. (2007). Characterisation of a newly identified human rhinovirus, HRV-QPM, discovered in infants with bronchiolitis. J. Clin. Virol. 39: 67-75.

Tapparel, C., Junier, T., Gerlach, D., Van-Belle, S., Turin, L., Cordey, S., Muhlemann, K., Regamey, N., Aubert, J.D., Soccal, P.M., Eigenmann, P., Zdobnov, E. and Kaiser, L. (2009a). New respiratory enterovirus and recombinant rhinoviruses among circulating picornaviruses. Emerging Infect. Dis. 15: 719-726.

Tapparel, C., L'Huillier, A.G., Rougemont, A.L., Beghetti, M., Barazzone-Argiroffo, C. and Kaiser, L. (2009b). Pneumonia and pericarditis in a child with HRV-C infection: a case report. J. Clin. Virol. 45: 157-160.

 
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