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 MuKV-1 seqs

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Unassigned
  Genus: Kobuvirus

Species: Aichivirus A

Type: murine kobuvirus 1 (MuKV-1)
5' UTR L VP0 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR

(White areas indicate genes which haven't yet been sequenced completely; grey areas are where only partial sequences exist)

 

 
Virus Strain Region Length Accession no. Reference Comments

Murine kobuvirus 1 (MuKV-1)

MuKV-1 M-5/USA/2010 CG(p) 8198 JF755427 Phan et al., 2011 host: Peromyscus crinitus
         
(canyon mouse)
MuKV-1 NYC/2014/M014/0146/2014 CG(p) 8099 MF175074 Williams et al., 2018 host: Mus musculus
             

Murine kobuvirus ? (MuKV-?)

MuKV-? TF5WM/HUN/2010 3D(p)+3'UTR 941 JQ408726 Farkas et al., 2012 host: Apodemus agrarius
(striped field mouse)
MuKv-? KoV-SewKTM (Nepal/2009) CG(p) 6939 JQ898342 Ng et al., 2012 5'UTR, L & part of VP0 missing
             

Marmot kobuvirus (MmKV)

MmKV HT9/China/2013 CG(p) 8283 KY855436 Luo et al., 2018 host: Marmota himalayana
             

Norway rat kobuvirus 1 (NrKoV-1)

NrKoV-1 rat/NYC-E18/USA/2012 3D(p) 924 KJ950909 Firth et al., 2014  
NrKoV-1 rat/NYC-E18b/USA/2012 VP1+ 1276 KJ950942 Firth et al., 2014  
NrKoV-1 rat/NYC-A11/USA/2013 VP1(p) 309 KJ950943 Firth et al., 2014  
NrKoV-1 rat/NYC-A15a/USA/2013 VP1(p) 309 KJ950944 Firth et al., 2014  
NrKoV-1 rat/NYC-A15b/USA/2012 VP1+ 1494 KJ950945 Firth et al., 2014  
NrKoV-1 rat/NYC-A16/USA/2013 VP1(p) 310 KJ950946 Firth et al., 2014  
NrKoV-1 rat/NYC-A20/USA/2013 VP1(p) 310 KJ950947 Firth et al., 2014  
NrKoV-1 rat/NYC-A22/USA/2013 VP1(p) 310 KJ950948 Firth et al., 2014  
NrKoV-1 rat/NYC-A23/USA/2013 VP1(p) 310 KJ950949 Firth et al., 2014  
NrKoV-1 rat/NYC-A5/USA/2013 VP1(p) 310 KJ950950 Firth et al., 2014  
NrKoV-1 rat/NYC-A9/USA/2013 VP1(p) 310 KJ950951 Firth et al., 2014  
NrKoV-1 rat/NYC-B1/USA/2013 VP1(p) 310 KJ950952 Firth et al., 2014  
NrKoV-1 rat/NYC-B10/USA/2013 VP1(p) 310 KJ950953 Firth et al., 2014  
NrKoV-1 rat/NYC-B12/USA/2013 VP1(p) 309 KJ950954 Firth et al., 2014  
NrKoV-1 rat/NYC-B5/USA/2013 VP1(p) 309 KJ950955 Firth et al., 2014  
NrKoV-1 rat/NYC-B7/USA/2013 VP1(p) 310 KJ950956 Firth et al., 2014  
NrKoV-1 rat/NYC-B8/USA/2013 VP1(p) 309 KJ950957 Firth et al., 2014  
NrKoV-1 rat/NYC-B9/USA/2013 VP1+ 1568 KJ950958 Firth et al., 2014  
NrKoV-1 rat/NYC-C1/USA/2013 VP1(p) 310 KJ950959 Firth et al., 2014  
NrKoV-1 rat/NYC-C14/USA/2013 VP1(p) 310 KJ950960 Firth et al., 2014  
NrKoV-1 rat/NYC-D14/USA/2013 VP1(p) 310 KJ950961 Firth et al., 2014  
NrKoV-1 rat/NYC-D19/USA/2013 VP1(p) 308 KJ950962 Firth et al., 2014  
NrKoV-1 rat/NYC-D21/USA/2013 VP1(p) 310 KJ950963 Firth et al., 2014  
NrKoV-1 rat/NYC-D22/USA/2013 VP1(p) 310 KJ950964 Firth et al., 2014  
NrKoV-1 rat/NYC-D24/USA/2013 VP1(p) 310 KJ950965 Firth et al., 2014  
NrKoV-1 rat/NYC-D26/USA/2013 VP1(p) 310 KJ950966 Firth et al., 2014  
NrKoV-1 rat/NYC-D3/USA/2013 VP1(p) 310 KJ950967 Firth et al., 2014  
NrKoV-1 rat/NYC-D5/USA/2013 VP1(p) 310 KJ950968 Firth et al., 2014  
NrKoV-1 rat/NYC-E27/USA/2013 VP1(p) 310 KJ950969 Firth et al., 2014  
  rat/Wencheng-
Rt386-2/China/2012
CG 8295 MF352432 Guo & Zhang, unpub. Host: Rattus tanezumi
             
(p), partial, sequence not complete

  References

Farkas, T., Fey, B., Keller, G., Martella, V. and Egyed, L. (2012). Molecular detection of novel astroviruses in wild and laboratory mice. Virus Genes 45: 518-525.

Firth, C., Bhat, M., Firth, M.A., Williams, S.H., Frye, M.J., Simmonds, P., Conte, J.M., Ng, J., Garcia, J., Bhuva, N.P., Lee, B., Che, X., Quan, P.L. and Lipkin, W.I. (2014). Detection of zoonotic pathogens and characterization of novel viruses carried by commensal Rattus norvegicus in New York City. MBio 5(5). pii: e01933-14.

Luo XL, Lu S, Jin D, Yang J, Wu SS, Xu J. Marmota himalayana in the Qinghai-Tibetan plateau as a special host for bi-segmented and unsegmented picobirnaviruses. Emerg Microbes Infect. 2018 Mar 7; 7(1): 20. doi: 10.1038/s41426-018-0020-6. PubMed PMID: 29511159; PubMed Central PMCID: PMC5841229.

Ng, T.F., Marine, R., Wang, C., Simmonds, P., Kapusinszky, B., Bodhidatta, L., Oderinde, B.S., Wommack, K.E. and Delwart, E. (2012). High variety of known and new RNA and DNA viruses of diverse origins in untreated sewage. J. Virol. 86: 12161-12175.

Phan, T.G., Kapusinszky, B., Wang, C., Rose, R.K., Lipton, H.L. and Delwart, E.L. (2011). The fecal viral flora of wild rodents. PLoS Pathog 7(9): e1002218. doi:10.1371/journal.ppat.1002218.

Willams, S.H., Che, X., Garcia, J.A., Klena, J.D., Lee, B., Muller, D., Ulrich, W., Corrigan, R.M., Nichol, S., Jain, K. and Lipkin, W.I. (2018). Viral Diversity of House Mice in New York City. MBio 9 (2), e01354-17.