| |
Genus: Kobuvirus
Species: Aichi virus
| Serotype(s): Aichi virus (AiV) |
|
| 5'
UTR |
L |
VP0 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| |
|
|
(White areas indicate genes which haven't yet been
sequenced completely;
grey areas are where only partial sequences exist)
| Virus |
Strain |
Region |
Length
|
Accession No. |
Reference |
Comments |
|
|
| AiV |
A846/88 |
CG |
8251 |
AB010145 |
Yamashita et al., 1998 |
5' end missing |
| CG |
8280 |
AB040749 |
Sasaki et al., 2001 |
|
| AiV |
BAY/1/03/DEU |
CG |
8266 |
AY747174 |
Oh et al.,
2006 |
19 nt missing at 5' end
|
| AiV |
Goiania/GO/03/01/Brazil |
CG |
8266 |
DQ028632 |
Oh et al.,
2006 |
19 nt missing at 5' end
|
| AiV |
A1156/87 |
3CD(p) |
519 |
AB079268 |
Yamashita et al., 2000 |
|
| 3D(p) |
591 |
AB097164 |
Yamashita et al., 2003 |
|
| AiV |
A1258/87 |
3CD(p) |
519 |
AB034649 |
Yamashita et al., 2000 |
|
| AiV |
A844/88 |
3CD(p) |
519 |
AB034651 |
Yamashita et al., 2000 |
|
| AiV |
A848/88 |
3CD(p) |
519 |
AB034652 |
Yamashita et al., 2000 |
|
| AiV |
A942/89 |
3CD(p) |
519 |
AB034653 |
Yamashita et al., 2000 |
|
| AiV |
T132/90 |
3CD(p) |
519 |
AB034663 |
Yamashita et al., 2000 |
|
| AiV |
P766/90 |
3CD(p) |
519 |
AB034658 |
Yamashita et al., 2000 |
|
|
3D(p) |
591 |
AB097166 |
Yamashita et al., 2003 |
|
| AiV |
P803/90 |
3CD(p) |
519 |
AB034659 |
Yamashita et al., 2000 |
|
| AiV |
P832/90 |
3CD(p) |
519 |
AB034660 |
Yamashita et al., 2000 |
|
| AiV |
N128/91 |
3CD(p) |
519 |
AB034655 |
Yamashita et al., 2000 |
|
| AiV |
P840/91 |
3CD(p) |
519 |
AB034661 |
Yamashita et al., 2000 |
|
| AiV |
P880/91 |
3CD(p) |
519 |
AB034662 |
Yamashita et al., 2000 |
|
| AiV |
N1277/91 |
3CD(p) |
519 |
AB034654 |
Yamashita et al., 2000 |
|
| AiV |
M166/92 |
3CD(p) |
519 |
AB034657 |
Yamashita et al., 2000 |
|
| AiV |
M166/91 |
3D(p) |
591 |
AB097165 |
Yamashita et al., 2004 |
|
| AiV |
N628/92 |
3CD(p) |
519 |
AB034656 |
Yamashita et al., 2000 |
|
| AiV |
A1471/96 |
3CD(p) |
519 |
AB034650 |
Yamashita et al., 2000 |
|
| AiV |
144/96(THA) |
3CD(p) |
519 |
AB092824 |
Yamashita and Sakae,
2003 |
|
| AiV |
359/96(SIN) |
3CD(p) |
519 |
AB092825 |
Yamashita and Sakae,
2003 |
|
| AiV |
364/96(VIE) |
3CD(p) |
519 |
AB092826 |
Yamashita and Sakae,
2003 |
|
| AiV |
132/96(INA) |
3CD(p) |
519 |
AB092827
|
Yamashita and Sakae,
2003 |
|
| AiV |
494/97(SIN) |
3CD(p) |
519 |
AB092828 |
Yamashita and Sakae,
2003 |
|
| AiV |
177/96(INA) |
3CD(p) |
519 |
AB092829 |
Yamashita and Sakae,
2003 |
|
| AiV |
139/96(IND) |
3CD(p) |
519 |
AB092830 |
Yamashita and Sakae,
2003 |
|
| AiV |
684/98(THA) |
3CD(p) |
519 |
AB092831 |
Yamashita and Sakae,
2003 |
|
| AiV |
414/96(INA) |
3CD(p) |
519 |
AB092832 |
Yamashita and Sakae,
2003 |
|
| AiV |
488/97(IND) |
3CD(p) |
519 |
AB092833 |
Yamashita and Sakae,
2003 |
|
| AiV |
700/98(NEP) |
3CD(p) |
519 |
AB092834 |
Yamashita and Sakae,
2003 |
|
|
AiV |
RN48 (France) |
3CD(p) |
477 |
DQ145759 |
Ambert-Balay et
al., 2008 |
|
|
AiV |
RN57 (France) |
3CD(p) |
468 |
DQ145760 |
Ambert-Balay et
al., 2008 |
|
|
AiV |
R586 (France) |
3CD(p) |
486 |
DQ145761 |
Ambert-Balay et
al., 2008 |
|
|
AiV |
R380 (France) |
3CD(p) |
489 |
DQ145762 |
Ambert-Balay et
al., 2008 |
|
|
AiV |
R586 (France) |
VP1(p) |
539 |
DQ206639 |
Bon et
al., unpub. |
|
|
AiV |
RN48 (France) |
VP1(p) |
531 |
DQ206640 |
Bon et
al., unpub. |
|
|
AiV |
RN57 (France) |
VP1(p) |
504 |
DQ206641 |
Bon et
al., unpub. |
|
|
AiV |
J-4397/02 (Japan) |
3CD(p) |
519 |
EF079149 |
Pham
et al., 2007 |
|
|
AiV |
J-4415/02 (Japan) |
3CD(p) |
519 |
EF079150 |
Pham
et al., 2007 |
|
|
AiV |
J-4432/02 (Japan) |
3CD(p) |
519 |
EF079151 |
Pham
et al., 2007 |
|
|
AiV |
J-4444/02 (Japan) |
3CD(p) |
519 |
EF079152 |
Pham
et al., 2007 |
|
|
AiV |
J-4478/02 (Japan) |
3CD(p) |
519 |
EF079153 |
Pham
et al., 2007 |
|
|
AiV |
J-4827/02 (Japan) |
3CD(p) |
519 |
EF079154 |
Pham
et al., 2007 |
|
|
AiV |
B-5/05 (Bangladesh) |
3CD(p) |
519 |
EF079155 |
Pham
et al., 2007 |
|
|
AiV |
B-101/05 (Bangladesh) |
3CD(p) |
519 |
EF079156 |
Pham
et al., 2007 |
|
|
AiV |
B-171/05 (Bangladesh) |
3CD(p) |
519 |
EF079157 |
Pham
et al., 2007 |
|
|
AiV |
B-370/05 (Bangladesh) |
3CD(p) |
519 |
EF079158 |
Pham
et al., 2007 |
|
|
AiV |
B-1055/05 (Bangladesh) |
3CD(p) |
519 |
EF079159 |
Pham
et al., 2007 |
|
|
AiV |
T-132/02 (Thailand) |
3CD(p) |
519 |
EF079160 |
Pham
et al., 2007 |
|
|
AiV |
VN-636/03 (Vietnam) |
3CD(p) |
519 |
EF079161 |
Pham
et al., 2007 |
|
|
AiV |
VN-640/03 (Vietnam) |
3CD(p) |
519 |
EF079162 |
Pham
et al., 2007 |
|
|
AiV |
Chshc5 (China 2008) |
3CD(p) |
519 |
FJ890516 |
Yang et al., 2009 |
|
|
AiV |
Chshc6 (China 2008) |
3CD(p) |
519 |
FJ890517 |
Yang et al., 2009 |
|
|
AiV |
Chshc8 (China 2008) |
3CD(p) |
519 |
FJ890518 |
Yang et al., 2009 |
|
|
AiV |
Chshc1 (China 2008) |
3CD(p) |
519 |
FJ890519 |
Yang et al., 2009 |
|
|
AiV |
Chshc2 (China 2008) |
3CD(p) |
519 |
FJ890520 |
Yang et al., 2009 |
|
|
AiV |
Chshc3 (China 2008) |
3CD(p) |
519 |
FJ890521 |
Yang et al., 2009 |
|
|
AiV |
Chshc4 (China 2008) |
3CD(p) |
519 |
FJ890522 |
Yang et al., 2009 |
|
|
AiV |
Chshc7 (China 2008) |
CG |
8244 |
FJ890523 |
Yang et al., 2009 |
|
|
AiV |
Szigetvar-HUN298/2000/HUN |
3D(p) |
173 |
FJ225407 |
Reuter et al., 2009 |
|
|
|
|
|
|
|
|
|
CG = complete genome
(p) = partial gene sequence |
Ambert-Balay, K., Lorrot, M., Bon, F., Giraudon, H., Kaplon,
J., Wolfer, M., Lebon, P., Gendrel, D. and Pothier, P (2008). Prevalence and
genetic diversity of Aichi virus strains in stool samples from community and
hospitalized patients. J. Clin. Microbiol. 46: 1252-1258.
Bon, F., Lorrot, M., and Pothier, P. Unpublished.
[Laboratory of Virology, Chu Dijon, 1 bd de Lattre de Tassigny, Dijon 21079, RL
France].
Oh, D.Y., Silva, P.A., Hauroeder, B., Diedrich,
S., Cardoso, D.D. and Schreier E. (2006). Molecular characterization
of the first Aichi viruses isolated in Europe and in South America.
Arch. Virol. 151: 1199-1206.
Pham, N.T., Khamrin, P., Nguyen, T.A., Kanti,
D.S., Phan, T.G., Okitsu, S. and Ushijima, H. (2007). Isolation and
molecular characterization of Aichi viruses from fecal specimens
collected in Japan, Bangladesh, Thailand, and Vietnam. J. Clin.
Microbiol. 45: 2287-2288.
Sasaki, J., Kusuhara, Y., Maeno, Y., Kobayashi, N., Yamashita, T., Sakae, K.,
Takeda, N. and Taniguchi,K. (2001). Construction of an infectious cDNA clone of Aichi
virus (a new member of the family Picornaviridae) and mutational analysis of a
stem-loop structure at the 5' end of the genome. J. Virol. 75: 8021-8030.
Yamashita, T. and Sakae, K. (2003). Molecular Biology and Epidemiology of
Aichi Virus and Other Diarrhoeogenic Enteroviruses. (in) Dessenlberger U., Gray
J. (eds.). Perspectives In Medical Virology, 9. Viral Gastroenteritis.:645-657.
Elsevier Science B.V., Amsterdam (2003).
Yamashita, T., Sakae, K., Tsuzuki, H., Suzuki, Y., Ishikawa, N., Takeda, N., Miyamura,
T. and Yamazaki, S. (1998). Complete nucleotide sequence and genetic organization of Aichi
virus, a distinct member of the Picornaviridae associated with acute
gastroenteritis in humans. J. Virol. 72: 8408-8412.
Yamashita, T., Sugiyama, M., Tsuzuki, H., Sakae, K., Suzuki, Y. and Miyazaki,
Y. (2000). Application of a reverse transcription-PCR for identification and differentiation of Aichi
virus, a new member of the picornavirus family associated with gastroenteritis in
humans. J. Clin. Microbiol. 38: 2955-2961.
Yamashita, T., Ito, M., Kabashima,
Y., Tsuzuki, H., Fujiura, A. and Sakae, K. (2003). Isolation and
characterization of a new species of kobuvirus associated with cattle. J.
Gen. Virol. 84: 3069-3077.
Yang, S., Zhang, W., Shen, Q., Yang, Z., Zhu, J., Cui, L. and Hua, X. (2009).
Aichi virus strains in children with gastroenteritis, China. Emerging Infect.
Dis. 15: 1703-1705.
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