| |
Genus: Kobuvirus
Species: Aichi virus
| Serotype(s): Aichi virus (AiV) |
|
| 5'
UTR |
L |
VP0 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| |
|
|
(White areas indicate genes which haven't yet been
sequenced completely;
grey areas are where only partial sequences exist)
| Virus |
Strain |
Region |
Length
|
Accession No. |
Reference |
Comments |
|
|
| AiV |
A846/88 |
CG |
8251 |
AB010145 |
Yamashita et al., 1998 |
5' end missing |
| CG |
8280 |
AB040749 |
Sasaki et al., 2001 |
|
| AiV |
BAY/1/03/DEU |
CG |
8266 |
AY747174 |
Oh et al., unpub. |
19 nt missing at 5' end
|
| AiV |
Goiania/GO/03/01/Brazil |
CG |
8266 |
DQ028632 |
Silva et al., unpublished |
19 nt missing at 5' end
|
| AiV |
A1156/87 |
3CD(p) |
519 |
AB079268 |
Yamashita et al., 2000 |
|
| 3D(p) |
591 |
AB097164 |
Yamashita et al., 2003 |
|
| AiV |
A1258/87 |
3CD(p) |
519 |
AB034649 |
Yamashita et al., 2000 |
|
| AiV |
A844/88 |
3CD(p) |
519 |
AB034651 |
Yamashita et al., 2000 |
|
| AiV |
A848/88 |
3CD(p) |
519 |
AB034652 |
Yamashita et al., 2000 |
|
| AiV |
A942/89 |
3CD(p) |
519 |
AB034653 |
Yamashita et al., 2000 |
|
| AiV |
T132/90 |
3CD(p) |
519 |
AB034663 |
Yamashita et al., 2000 |
|
| AiV |
P766/90 |
3CD(p) |
519 |
AB034658 |
Yamashita et al., 2000 |
|
|
3D(p) |
591 |
AB097166 |
Yamashita et al., 2003 |
|
| AiV |
P803/90 |
3CD(p) |
519 |
AB034659 |
Yamashita et al., 2000 |
|
| AiV |
P832/90 |
3CD(p) |
519 |
AB034660 |
Yamashita et al., 2000 |
|
| AiV |
N128/91 |
3CD(p) |
519 |
AB034655 |
Yamashita et al., 2000 |
|
| AiV |
P840/91 |
3CD(p) |
519 |
AB034661 |
Yamashita et al., 2000 |
|
| AiV |
P880/91 |
3CD(p) |
519 |
AB034662 |
Yamashita et al., 2000 |
|
| AiV |
N1277/91 |
3CD(p) |
519 |
AB034654 |
Yamashita et al., 2000 |
|
| AiV |
M166/92 |
3CD(p) |
519 |
AB034657 |
Yamashita et al., 2000 |
|
| AiV |
M166/91 |
3D(p) |
591 |
AB097165 |
Yamashita et al., 2004 |
|
| AiV |
N628/92 |
3CD(p) |
519 |
AB034656 |
Yamashita et al., 2000 |
|
| AiV |
A1471/96 |
3CD(p) |
519 |
AB034650 |
Yamashita et al., 2000 |
|
| AiV |
144/96(THA) |
3CD(p) |
519 |
AB092824 |
Yamashita and Sakae,
2003 |
|
| AiV |
359/96(SIN) |
3CD(p) |
519 |
AB092825 |
Yamashita and Sakae,
2003 |
|
| AiV |
364/96(VIE) |
3CD(p) |
519 |
AB092826 |
Yamashita and Sakae,
2003 |
|
| AiV |
132/96(INA) |
3CD(p) |
519 |
AB092827
|
Yamashita and Sakae,
2003 |
|
| AiV |
494/97(SIN) |
3CD(p) |
519 |
AB092828 |
Yamashita and Sakae,
2003 |
|
| AiV |
177/96(INA) |
3CD(p) |
519 |
AB092829 |
Yamashita and Sakae,
2003 |
|
| AiV |
139/96(IND) |
3CD(p) |
519 |
AB092830 |
Yamashita and Sakae,
2003 |
|
| AiV |
684/98(THA) |
3CD(p) |
519 |
AB092831 |
Yamashita and Sakae,
2003 |
|
| AiV |
414/96(INA) |
3CD(p) |
519 |
AB092832 |
Yamashita and Sakae,
2003 |
|
| AiV |
488/97(IND) |
3CD(p) |
519 |
AB092833 |
Yamashita and Sakae,
2003 |
|
| AiV |
700/98(NEP) |
3CD(p) |
519 |
AB092834 |
Yamashita and Sakae,
2003 |
|
|
AiV |
RN48 (France) |
3CD(p) |
477 |
DQ145759 |
Bon et
al., unpub.(b) |
|
|
AiV |
RN57 (France) |
3CD(p) |
468 |
DQ145760 |
Bon et
al., unpub.(b) |
|
|
AiV |
R586 (France) |
3CD(p) |
486 |
DQ145761 |
Bon et
al., unpub.(b) |
|
|
AiV |
R380 (France) |
3CD(p) |
489 |
DQ145762 |
Bon et
al., unpub.(b) |
|
|
AiV |
R586 (France) |
VP1(p) |
539 |
DQ206639 |
Bon et
al., unpub.(a) |
|
|
AiV |
RN48 (France) |
VP1(p) |
531 |
DQ206640 |
Bon et
al., unpub.(a) |
|
|
AiV |
RN57 (France) |
VP1(p) |
504 |
DQ206641 |
Bon et
al., unpub.(a) |
|
|
AiV |
J-4397/02 (Japan) |
3CD(p) |
519 |
EF079149 |
Ushijima
et al., unpub. |
|
|
AiV |
J-4415/02 (Japan) |
3CD(p) |
519 |
EF079150 |
Ushijima
et al., unpub. |
|
|
AiV |
J-4432/02 (Japan) |
3CD(p) |
519 |
EF079151 |
Ushijima
et al., unpub. |
|
|
AiV |
J-4444/02 (Japan) |
3CD(p) |
519 |
EF079152 |
Ushijima
et al., unpub. |
|
|
AiV |
J-4478/02 (Japan) |
3CD(p) |
519 |
EF079153 |
Ushijima
et al., unpub. |
|
|
AiV |
J-4827/02 (Japan) |
3CD(p) |
519 |
EF079154 |
Ushijima
et al., unpub. |
|
|
AiV |
B-5/05 (Bangladesh) |
3CD(p) |
519 |
EF079155 |
Ushijima
et al., unpub. |
|
|
AiV |
B-101/05 (Bangladesh) |
3CD(p) |
519 |
EF079156 |
Ushijima
et al., unpub. |
|
|
AiV |
B-171/05 (Bangladesh) |
3CD(p) |
519 |
EF079157 |
Ushijima
et al., unpub. |
|
|
AiV |
B-370/05 (Bangladesh) |
3CD(p) |
519 |
EF079158 |
Ushijima
et al., unpub. |
|
|
AiV |
B-1055/05 (Bangladesh) |
3CD(p) |
519 |
EF079159 |
Ushijima
et al., unpub. |
|
|
AiV |
T-132/02 (Thailand) |
3CD(p) |
519 |
EF079160 |
Ushijima
et al., unpub. |
|
|
AiV |
VN-636/03 (Vietnam) |
3CD(p) |
519 |
EF079161 |
Ushijima
et al., unpub. |
|
|
AiV |
VN-640/03 (Vietnam) |
3CD(p) |
519 |
EF079162 |
Ushijima
et al., unpub. |
|
CG = complete genome
(p) = partial gene sequence |
Bon, F., Lorrot, M., and Pothier, P. (a). Unpublished.
[Laboratory of Virology, Chu Dijon, 1 bd de Lattre de Tassigny, Dijon 21079, RL
France].
Bon, F., Lorrot, M., Giraudon, H., Kaplon, J.,
Pothier, P. and Gendrel, D. (b). Unpublished. [Laboratory of
Virology, Chu Dijon, 1 bd de Lattre de Tassigny, Dijon 21079, RL
France].
Oh, D.-Y., Hauroeder, B. and Schreier, E. Isolation and characterization of
Aichi virus in Germany. Unpublished. [Molecular Epidemiology of Viral Pathogens,
Robert Koch Institute, Nordufer 20, Berlin 13353, Germany]
Sasaki, J., Kusuhara, Y., Maeno, Y., Kobayashi, N., Yamashita, T., Sakae, K.,
Takeda, N. and Taniguchi,K. (2001). Construction of an infectious cDNA clone of Aichi
virus (a new member of the family Picornaviridae) and mutational analysis of a
stem-loop structure at the 5' end of the genome. J. Virol. 75: 8021-8030.
Silva, P.A., Cardoso, D.D.P. and Schreier, E. Molecular characterization of
Aichi virus from Brazil. Unpublished. [Molecular Epidemiology of Viral
Pathogens, Robert Koch Institute, Nordufer 20, Berlin 13353, Germany]
Ushijima, H., Okitsu, S., Pham, N.T.K., Khamrin,
P., Nguyen, T.A., Dey, S.K. and Phan, T.G. Isolation and molecular
characterization of the Aichi viruses from fecal specimens collected
in Japan, Bangladesh, Thailand and Vietnam. Unpublished.
[Developmental Medical Sciences, Institute of International Health,
7-3-1
Hongo Bunkyu-ku, Tokyo 113-0033, Japan].
Yamashita, T. and Sakae, K. (2003). Molecular Biology and Epidemiology of
Aichi Virus and Other Diarrhoeogenic Enteroviruses. (in) Dessenlberger U., Gray
J. (eds.). Perspectives In Medical Virology, 9. Viral Gastroenteritis.:645-657.
Elsevier Science B.V., Amsterdam (2003).
Yamashita, T., Sakae, K., Tsuzuki, H., Suzuki, Y., Ishikawa, N., Takeda, N., Miyamura,
T. and Yamazaki, S. (1998). Complete nucleotide sequence and genetic organization of Aichi
virus, a distinct member of the Picornaviridae associated with acute
gastroenteritis in humans. J. Virol. 72: 8408-8412.
Yamashita, T., Sugiyama, M., Tsuzuki, H., Sakae, K., Suzuki, Y. and Miyazaki,
Y. (2000). Application of a reverse transcription-PCR for identification and differentiation of Aichi
virus, a new member of the picornavirus family associated with gastroenteritis in
humans. J. Clin. Microbiol. 38: 2955-2961.
Yamashita, T., Ito, M., Kabashima,
Y., Tsuzuki, H., Fujiura, A. and Sakae, K. (2003). Isolation and
characterization of a new species of kobuvirus associated with cattle. J.
Gen. Virol. 84: 3069-3077.
|
