| |
Genus: Parechovirus
Species: Ljungan virus
| Serotype: Ljungan virus (LV) |
|
| 5'
UTR |
VP0 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| |
|
|
(White areas indicate genes which haven't yet been
sequenced completely;
grey areas are where only partial sequences exist)
| Virus |
Strain |
Region |
Length
|
Accession No. |
Reference |
Comments |
|
|
|
LV |
87-012 |
CG |
7607 |
AF327920 |
Johansson et al.,
2002 |
|
| LV |
87-012G |
CG |
7635 |
EF202833 |
Johansson et al.,
2004;
Ekstrom et al., 2007 |
cell culture adapted 87-012 |
|
LV |
174F |
CG |
7608 |
AF327921 |
Johansson et al.,
2002 |
|
| LV |
145SL |
5'UTR(p)+VP0+VP3 |
2118
|
AF020541 |
Niklasson et al., 1998 |
|
|
CG |
7609 |
AF327922 |
Johansson et al.,
2002 |
|
|
LV |
M1146 |
CG* |
7495 |
AF538689 |
Johansson et al.,
2003 |
* 94 nt missing from 5' end |
|
CG = complete genome; (p) = partial gene sequence |
Ekstrom, J.O., Tolf, C., Fahlgren, C., Johansson, E.S.,
Arbrandt, G., Niklasson, B., Edman, K.A. and Lindberg, A.M. (2007). Replication
of Ljungan virus in cell culture: The genomic 5'-end, infectious cDNA clones and
host cell response to viral infections Virus Res. 130: 129-139.
Johansson, S., Niklasson,
B., Maizel, J. Gorbalenya, A.E. and Lindberg,
A.M. (2002). Molecular analysis of three Ljungan
virus isolates reveals a new, close-to-root lineage of the Picornaviridae
with a cluster of two unrelated 2A proteins.J. Virol. 76: 8920-8930.
Johansson, E.S., Niklasson, B., Tesh, R.B., Shafren, D.R., Travassos Da Rosa,
A.P.A. and Lindberg, A.M. (2003). Molecular characterization of M1146, an
American isolate of Ljungan virus (LV) reveals the presence of a new LV
genotype. J. Gen. Virol. 84: 837-844.
Johansson, E.S., Ekstrom, J.-O., Shafren, D.R.,
Frisk, G., Hyypia, T., Edman, K. and Lindberg, A.M. (2004).
Cell culture propagation and biochemical analysis of the Ljungan
virus prototype strain Biochem. Biophys. Res. Commun. 317:
1023-1029.
Niklasson, B., Kinnunen, L., Hornfeldt, B., Horling, J., Benemar, C., Hedlund, K.O.,
Matskova, L., Hyypiä, T. and Winberg, G. (1999). A new picornavirus isolated from bank
voles (Clethrionomys glareolus). Virology 255: 86-93.
|