| |
Genus:
Sapelovirus
Species:
Simian sapelovirus
| Serotype: simian sapelovirus 1
(SSV-1) |
|
| 5' UTR |
L |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Serotype: simian sapelovirus
2 (SSV-2) |
|
| 5' UTR |
L |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Serotype: simian sapelovirus
3 (SSV-3) |
|
| 5' UTR |
L |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| |
|
|
(White areas indicate genes which haven't yet been
sequenced completely;
grey areas are where only partial sequences exist)
| Virus |
Strain |
Region
|
Length
|
Accession No.
|
Reference |
Comments |
Simian sapelovirus 1 (SSV-1)
|
| SSV-1 |
SV2-2383 |
VP1 |
852 |
AF326755 |
Oberste et al, 2002 |
|
|
CG* |
8126 |
AY064708 |
Oberste et al., 2003 |
*5' end of genome missing |
Simian sapelovirus 2 (SSV-2)
|
| SSV-2 |
SV16-2450-SD |
5'UTR(p)+L+VP4(p) |
1059 |
AY064715 |
Oberste et al., 2003 |
|
| VP1 |
879 |
AF326752 |
Oberste et al, 2002 |
|
|
3D(p) |
599 |
AY064709 |
Oberste et al., 2003 |
|
| SSV-2 |
SV18-2481-B2 |
5'UTR(p)+L+VP4(p) |
1060 |
AY064716 |
Oberste et al., 2003 |
|
| VP1 |
873 |
AF326753 |
Oberste et al, 2002 |
|
|
3D(p) |
599 |
AY064710 |
Oberste et al., 2003 |
|
| 3D(p) |
492 |
n/a |
Pöyry et al., 1999 |
sequence is identical to
AY064710 |
| SSV-2 |
SV42-M9 |
5'UTR(p)+L+VP4(p) |
1059 |
AY064717 |
Oberste et al., 2003 |
|
| VP1 |
888 |
AF326760 |
Oberste et al, 2002 |
|
|
3D(p) |
599 |
AY064711 |
Oberste et al., 2003 |
|
| SSV-2 |
SV44-OM114s |
5'UTR(p)+L+VP4(p) |
1026 |
AY064718 |
Oberste et al., 2003 |
|
| VP1 |
885 |
AF326762 |
Oberste et al, 2002 |
|
|
3D(p) |
599 |
AY064712 |
Oberste et al., 2003 |
|
| SSV-2 |
SV45-M19h |
5'UTR(p)+L+VP4(p) |
1053 |
AY064719 |
Oberste et al., 2003 |
|
| VP1 |
879 |
AF326763 |
Oberste et al, 2002 |
|
|
3D(p) |
599 |
AY064713 |
Oberste et al., 2003 |
|
Simian sapelovirus 3 (SSV-3)
|
| SSV-3 |
SV49-2600 |
5'UTR(p)+L+VP4(p) |
884 |
AY064720 |
Oberste et al., 2003 |
|
| VP1 |
876 |
AF326765 |
Oberste et al, 2002 |
|
|
3D(p) |
599 |
AY064714 |
Oberste et al., 2003 |
|
| SSV-3 |
VRDL1 |
CG* |
7971 |
EU789367 |
Victoria et al., 2008 |
*5' end of genome missing |
CG, complete genome
(p), partial gene sequence
*, prototype strain |
References
Oberste, M.S., Maher, K. and Pallansch, M.A. (2002). Molecular phylogeny and
proposed classification of the simian picornaviruses. J. Virol. 76: 1244-1251.
Oberste, M.S., Maher, K. and Pallansch, M.A. (2003). Genomic evidence
that simian virus 2 and six other simian picornaviruses represent a new genus in
Picornaviridae. Virology 314: 283-293.
Pöyry, T., Kinnunen, L., Hovi, T. and Hyypiä, T. (1999). Relationships between simian
and human enteroviruses. Journal of General Virology 80: 635-638.
Victoria, J.G., Kapoor, A., Dupuis, K., Schnurr,
D.P. and Delwart, E.L. (2008). Rapid Identification of Known and New
RNA Viruses from Animal Tissues. PLoS Pathog 4(9): e1000163.
doi:10.1371/journal.ppat.1000163.
|
