| |
Genus: Unassigned
Species: Unassigned
| Type: "human Kobu-like virus" |
|
| 5' UTR |
L |
VP0 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Type: "bat kobu-like virus" |
|
| 5' UTR |
L |
VP0 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
(White areas indicate genes which haven't yet been
sequenced completely;
grey areas are where only partial sequences exist)
| Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
"human kobu-like virus"
|
| Salivirus |
NG-J1 (Nigeria/2007) |
CG* |
7982 |
GQ179640 |
Li et al., 2009 |
* 5' end missing |
| Salivirus |
NG-F1 (Nigeria/2007) |
L(p); P1 to P3; 3' UTR |
6971 |
GQ507022 |
Li et al., 2009 |
* 5' end missing
& contains gaps |
| Human klassevirus 1 |
02394-01 (USA/2002) |
CG |
7989 |
GQ184145 |
Greninger et al., 2009 |
|
| Human klassevirus 1 |
Australia/84 |
L(p) to 3' end |
6404 |
GQ253930 |
Holtz et al., 2009 |
|
| Human klassevirus 1 |
Bar1 (Spain/2008) |
2C(p) |
345 |
GQ253931 |
Holtz et al., 2009 |
|
|
3D |
1001 |
GQ253932 |
Holtz et al., 2009 |
|
|
P1(p) |
1025 |
GQ253933 |
Holtz et al., 2009 |
|
| Human klassevirus 1 |
STL1 (USA/2008) |
2C(p) |
345 |
GQ253934 |
Holtz et al., 2009 |
|
|
3D |
1001 |
GQ253935 |
Holtz et al., 2009 |
|
|
P1(p) |
1025 |
GQ253936 |
Holtz et al., 2009 |
|
| Human klassevirus 1 |
SH1 (China) |
CG(p) |
7798 |
GU245894 |
Shan et al., 2010 |
|
| Human klassevirus 1 |
|
5' UTR(p) |
414 |
GU376738 |
Shan et al., 2010 |
|
| Human klassevirus 1 |
|
5' UTR(p) |
414 |
GU376739 |
Shan et al., 2010 |
|
| Human klassevirus 1 |
|
5' UTR(p) |
414 |
GU376740 |
Shan et al., 2010 |
|
| Human klassevirus 1 |
|
5' UTR(p) |
414 |
GU376741 |
Shan et al., 2010 |
|
| Human klassevirus 1 |
|
5' UTR(p) |
414 |
GU376742 |
Shan et al., 2010 |
|
| Human klassevirus 1 |
|
5' UTR(p) |
414 |
GU376743 |
Shan et al., 2010 |
|
| Human klassevirus 1 |
|
5' UTR(p) |
414 |
GU376744 |
Shan et al., 2010 |
|
| Human klassevirus 1 |
|
5' UTR(p) |
414 |
GU376745 |
Shan et al., 2010 |
|
| Human klassevirus 1 |
|
5' UTR(p) |
414 |
GU376746 |
Shan et al., 2010 |
|
| |
|
|
|
|
|
|
| Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
"bat kobu-like virus"
|
| bat kobu-like virus |
TM246k |
2C(p) |
206 |
HM228880 |
Li et al., 2010 |
|
| bat kobu-like virus |
TM001k |
VP3+VP1 |
1977 |
HM228881 |
Li et al., 2010 |
|
| bat kobu-like virus |
TM003k |
3D(p) |
1335 |
HM228882 |
Li et al., 2010 |
|
| bat kobu-like virus |
TM046k |
2BC(p) |
595 |
HM228883 |
Li et al., 2010 |
|
| bat kobu-like virus |
TM042k |
VP0(p) |
630 |
HM228884 |
Li et al., 2010 |
|
| |
|
|
|
|
|
|
CG = complete genome
(p) = partial gene sequence |
Greninger, A.L., Runckel, C., Chiu, C.Y., Haggerty, T., Parsonnet,
J., Ganem, D. and DeRisi, J.L. (2009). The complete genome of
klassevirus - a novel picornavirus in pediatric stool. Virology
Journal 6: 82 doi:10.1186/1743-422X-6-82.
Holtz, L.R., Finkbeiner, S.R., Zhao, G., Kirkwood, C.D., Girones,
R., Pipas, J.M. and Wang, D. (2009). Klassevirus 1, a previously
undescribed member of the family Picornaviridae, is
globally widespread. Virology Journal 2009, 6: 86
doi:10.1186/1743-422X-6-86.
Li, L., Victoria, J., Kapoor, A., Blinkova, O., Wang, C., Babrzadeh,
F., Mason, C.J., Pandey, P., Triki, H., Bahri, O., Oderinde, B.S.,
Baba, M.M., Bukbuk, D.N., Besser, J.M., Bartkus, J.M. and Delwart,
E.L. (2009). A novel picornavirus associated with gastroenteritis. J
Virol. 83: 12002-12006. Epub 2009 Sep 16.
doi:10.1128/JVI.01241-09.
Li, L., Victoria, J.G., Wang, C., Jones, M., Fellers, G.M., Kunz,
T.H. and Delwart, E. (2010). Bat guano virome: predominance of
dietary viruses from insects and plants plus novel mammalian
viruses. J. Virol. 84: 6955–6965 [Epub 2010 May 12]. |
