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EV-F seqs
EV-F in possums
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Unassigned
  Genus: Enterovirus

Species: Enterovirus F

Type: enterovirus F1 (EV-F1)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: enterovirus F2 (EV-F2)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: enterovirus F3 (EV-F3)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: enterovirus F4 (EV-F4)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: enterovirus F5 (EV-F5)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: enterovirus F6 (EV-F6)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type (candidate): enterovirus F7 (EV-F7)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR

(White areas indicate genes which haven't yet been sequenced completely;
grey areas are where only partial sequences exist)

References

Virus Strain Host Region

Length

Accession No. Reference Comments

Enterovirus F1 (EV-F1)

EV-F1 BEV-261*; M2; RM2 Bos taurus CG 7397 DQ092770 Zell et al., 2006  
EV-F1 RM2 (=BEV-261*) Bos taurus 5'NCR+P1 3321 X79369 McNally et al., 1994  
EV-F1 BEV-261* (Washington/58) Bos taurus 5'NCR(p) 377 AJ250672 Lin et al., unpub.  
EV-F1 alpaca/IL/USA/2007 Vicugna pacos
(alpaca)
CG 7433 KC748420 McClenahan et al., 2013  
EV-F1 JPN/TottoriU-31/2014 Bos taurus CG(p) 7463 LC081216 Odaka et al., unpub.  
EV-F1 goat/SD-S67/China/2018 goat CG 7455 MK639928 Chang et al., 2019  
EV-F1 env/NGR_2018 sewage CG(p) 7378 MN650196 Faleye et al., unpub.  
               

Enterovirus F2 (EV-F2)

EV-F2 PS 89* Bos taurus CG 7389 DQ092795 Zell et al., 2006  
EV-F2 PS 87 (=PS 89) Bos taurus CG 7426 AY508696 Goens et al., 2004  
EV-F2 Jena 38/02 (Germany) Bos taurus 5'UTR+P1+P2(p) 4353 DQ092788 Zell et al., 2006  
3D 1463 DQ092789 Zell et al., 2006  
EV-F2 Wye-3A Bos taurus CG 7450 AY508697 Goens et al., 2004  
EV-F2 BJ001 (China, 11-Nov-2009) Bos taurus CG 7430 HQ663846 Peng et al., unpub.  
EV-F2 BHM26 (China, 20-Dec-2008) Bos taurus CG 7433 HQ917060 Li et al., 2012  
EV-F2 BJ50 (China, 20-Dec-2008) Bos taurus CG 7416 HQ917061 Li et al., 2012  
EV-F2 Egypt/2014 Bos taurus CG 7417 KM667941 Sobhy et al., unpub.  
               

Enterovirus F3 (EV-F3)

EV-F3 PS87/Belfast*; ATCC VR-774 Bos taurus CG 7394 DQ092794 Zell et al., 2006  
EV-F3 PSU 87 (Pennsylvania/57) Bos taurus 5'NCR+P1 3321 X79368 McNally et al., 1994  
EV-F3 F266a (Surrey, England, 1962) Bos taurus CG 7393 n/a Knowles et al., unpub.  
EV-F3 M134b (Great Britain) Bos taurus CG(p) 7360 n/a Knowles et al., unpub.  
EV-F3 IS2/Bos taurus/JPN/1990 Bos taurus CG 7394 LC150010 Tsuchiaka et al., 2017  
EV-F3 Ho12/Bos taurus/JPN/2009 Bos taurus CG(p) 7350 LC150008 Tsuchiaka et al., 2017  
               

Enterovirus F4 (EV-F4)

EV-F4 W1* (New Zealand) Trichosurus vulpecula
(brushtail possum)
CG 7390 AY462106 Zheng, 2007  
EV-F4 W6 (New Zealand) Trichosurus vulpecula
(brushtail possum)
CG 7391 AY462107 Zheng, 2007  
               

Enterovirus F5 (EV-F5)

EV-F5 M80* (Norfolk, England, 1960) Bos taurus CG(p) 7361 n/a Knowles et al., unpub.
               

Enterovirus F6 (EV-F6)

EV-F6 T11f* (Great Britain, 1960) Bos taurus CG(p) 7358 n/a Knowles et al., unpub.  
               

Enterovirus F7 (EV-F7) candidate new type

EV-F7 yak/SWUN-AB001/China/2014 Bos grunniens (Yak) CG 7382 KU955844 He et al., 2016  
EV-F7 yak/S1/CHA/2013 Bos grunniens (Yak) 5'UTR(p) 555 KM822578 He et al., 2016  
EV-F7 yak/S6/CHA/2013 Bos grunniens (Yak) 5'UTR(p) 556 KM822579 He et al., 2016  
EV-F7 yak/S11/CHA/2013 Bos grunniens (Yak) 5'UTR(p) 558 KM822580 He et al., 2016  
EV-F7 yak/S15/CHA/2013 Bos grunniens (Yak) 5'UTR(p) 556 KM822581 He et al., 2016  
EV-F7 yak/S16/CHA/2013 Bos grunniens (Yak) 5'UTR(p) 558 KM822582 He et al., 2016  
EV-F7 yak/S17/CHA/2013 Bos grunniens (Yak) 5'UTR(p) 556 KM822583 He et al., 2016  
               

Enterovirus F? unassigned - divergent P1

EV-F? BEV AN12/Bos Taurus/JPN/2014 Bos Taurus CG 7414 LC038188 Tsuchiaka et al., 2017  
               

Enterovirus F?

EV-F? Wye 8844 (USA) Bos taurus 5'UTR(p) 302 AY724744 Goens et al., 2004  
EV-F? Wye 8875 (USA) Bos taurus 5'UTR+VP4(p) 1000 AY724745 Goens et al., 2004  
EV-F? BAN/2007/706589 Trachypithecus pileatus
(capped langur)
VP1(p) 219 JX538037 Oberste et al., 2013  
               
CG, complete genome
(p), partial gene sequence
*, prototype strain

References

Chang X, Lin Q, Hu J, Wang X, Li X, Cai M, Wang W, Zhang Z, Wang X. Discovery of a virus of the species Enterovirus F in goats. Arch Virol. 2019 Jul 18. doi: 10.1007/s00705-019-04331-9. [Epub ahead of print] PubMed PMID: 31321588.

He, H., Tang, C., Chen, X., Yue, H., Ren, Y., Liu, Y. and Zhang, B. (2016). Isolation and characterization of a new enterovirus F in yak feces in the Qinghai-Tibetan Plateau. Arch Virol. 2016 Oct 25 [Epub ahead of print].

Goens, S.D., Botero, S., Zemla, A., Zhou, C.E. and Perdue, M.L. (2004). Bovine enterovirus 2: complete genomic sequence and molecular modelling of a reference strain and a wild-type isolate from endemically infected US cattle. J. gen. Virol. 85: 3195-3203.

Li, Y., Chang, J., Wang, Q., Yu, L. (2012). Isolation of two Chinese bovine enteroviruses and sequence analysis of their complete genomes. Arch. Virol. 157: 2369-2375.

McClenahan, S.D., Scherba, G., Borst, L., Fredrickson, R.L., Krause, P.R. and Uhlenhaut, C. (2013) Discovery of a bovine enterovirus in alpaca. PLoS ONE 8(8): e68777.

McNally, R.M.P., Earle, J.A.P., McIlhatton, M., Hoey, E.M., Martin, S.J. (1994). The nucleotide sequence of the 5' non-coding and capsid coding genome regions of two bovine enterovirus strains. Arch. Virol. 139: 287-299.

Oberste, M.S., Feeroz, M.M., Maher, K., Nix, W.A., Engel, G.A., Hasan, K.M., Begum, S., Oh, G., Chowdhury, A.H., Pallansch, M.A. and Jones-Engel, L. (2013). Characterizing the picornavirus landscape among synanthropic nonhuman primates in Bangladesh, 2007 to 2008. J. Virol. 87: 558-571.

Tsuchiaka, S., Rahpaya, S.S., Otomaru, K., Aoki, H., Kishimoto, M., Naoi, Y., Omatsu, T., Sano, K., Okazaki-Terashima, S., Katayama, Y., Oba, M., Nagai, M. and Mizutani, T. (2017). Identification of a novel bovine enterovirus possessing highly divergent amino acid sequences in capsid protein. BMC Microbiol. 17: 18.

Zell, R., Krumbholz, A., Dauber, M., Hoey, E., Wutzler, P. (2006). Molecular-based reclassification of the bovine enteroviruses. J. Gen. Virol. 87: 375-385.

Zheng T. (2007). Characterisation of two enteroviruses isolated from Australian brushtail possums (Trichosurus vulpecula) in New Zealand. Arch. Virol. 152: 191-198. Epub 2006 Aug 17.

Zheng, T. and Chiang, H.C. (2007). Oral challenge of brushtail possums (
Trichosurus vulpecula) with possum enteroviruses: clinical observation, antibody response and virus excretion in faeces. NZ Vet. J. 55: 217-221.

 

 

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