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 Megrivirus C seqs

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  Genus: Megrivirus

Species: Megrivirus C

Type: megrivirus C1  
5' UTR VP0 VP3 VP1 2A1 2A2 2A3 2B 2C 3A 3B 3C 3D 3' UTR
Type: megrivirus C2  
5' UTR VP0 VP3 VP1 2A1 2A2 2A3 2B 2C 3A 3B 3C 3D 3' UTR

(White areas indicate genes which haven't yet been sequenced completely; grey areas are where only partial sequences exist)

Virus Strain Region Length Accession No. Reference Comments

megrivirus C1 (MeV-C1)

MeV-C1 ch/B21-CHV/2012/HUN  CG 9560 KF961186 Boros et al., 2014 aka chicken megrivirus
MeV-C1 ch/CHK-IV-CHV/2013/HUN CG 9566 KF961187 Boros et al., 2014 aka chicken megrivirus
MeV-C1 ch/CHK148/USA/2010 3D(p)+3'UTR 1312 JF424831 Farkas et al., 2012 aka chicken megrivirus
MeV-C1 ch/QIA01/SKR/2003 CG(p) 8851 KJ690629 Kim et al., 2015 aka chicken proventriculitis virus
MeV-C1 ch/QIA03/SKR/2004 2C(p)-3C(p) 1703 KJ690626 Kim et al., 2015 aka chicken proventriculitis virus
MeV-C1 ch/QIA04/SKR/2005 2C(p)-3C(p) 1448 KJ690627 Kim et al., 2015 aka chicken proventriculitis virus
MeV-C1 ch/QIA02/SKR/2006 2C(p)-3C(p) 1381 KJ690625 Kim et al., 2015 aka chicken proventriculitis virus
MeV-C1 ch/QIA05/SKR/2012
2C(p)-3C(p) 1418 KJ690628 Kim et al., 2015 aka chicken proventriculitis virus
MeV-C1 ch/D62/SKR/2013 2A3-2B 1179 KM254175 Kim et al., unpub. aka chicken megrivirus
MeV-C1 ch/D11/SKR/2007 2A3-3B 2935 KM254176 Kim et al., unpub. aka chicken megrivirus
MeV-C1 ch/EF84/700/NI/UK CG 9571 awaited Knowles et al., unpub. formerly avian entero-like virus 2
MeV-C1 ch/RS/BR/2015/4 3C 420 KY086294 Lima et al., unpub. aka chicken proventriculitis virus
MeV-C1 ch/RS/BR/2015/3 ? 215 KY086295 Lima et al., unpub. aka chicken proventriculitis virus
MeV-C1 ch/RS/BR/2015/2 ? 403 KY086296 Lima et al., unpub. aka chicken proventriculitis virus
MeV-C1 ch/RS/BR/2015/1 ? 981 KY086297 Lima et al., unpub. aka chicken proventriculitis virus
MeV-C1 ch/RS/BR/2015/2 ? 835 KY086292 Lima et al., unpub. aka chicken megrivirus
MeV-C1 ch/RS/BR/2015/1 ? 255 KY086293 Lima et al., unpub. aka chicken megrivirus
MeV-C? ch/RS/BR/2015/2S ? 1226 MG846455 Lima et al., 2018  
MeV-C? ch/RS/BR/2015/1R-3 ? 1282 MG846456 Lima et al., 2018  
MeV-C? ch/RS/BR/2015/5S-2 ? 1468 MG846457 Lima et al., 2018  
MeV-C? ch/RS/BR/2015/1R-2 ? 1542 MG846458 Lima et al., 2018  
MeV-C? ch/RS/BR/2015/5S-1 ? 4219 MG846459 Lima et al., 2018  
MeV-C? ch/RS/BR/2015/3S-1 ? 4536 MG846460 Lima et al., 2018  
MeV-C? ch/RS/BR/2015/1R-1 ? 4810 MG846461 Lima et al., 2018  
MeV-C? ch/RS/BR/2015/3S-2 ? to 3'UTR 5059 MG846462 Lima et al., 2018  
MeV-C? ch/RS/BR/2015/2R CG(p) 9555 MG846463 Lima et al., 2018  
MeV-C? ch/RS/BR/2015/5R CG(p) 9563 MG846464 Lima et al., 2018  
MeV-C? ch/RS/BR/2015/3R CG(p) 9577 MG846465 Lima et al., 2018  
MeV-C? ch/Karoon/Iran/2017 CG(p) 9570 MH125198 Ghalyanchi et al., unpub. aka chicken megrivirus
             

megrivirus C2 (MeV-C2)

MeV-C2 ch/27C/Hong Kong CG 9591 KF979336 Lau et al., 2014 aka chicken picornavirus 5
             

megrivirus C? (MeV-C?)

MeV-C? ch/MG9567/Brazil/2012 CG(p) 9567 MH806866 Gerber et al., unpub.  
             
CG = complete genome
(p) = partial gene sequence

References

Boros, ., Pankovics, P., Knowles, N.J., Nemes, C., Delwart, E. and Reuter, G. (2014). Comparative complete genome analysis of chicken and turkey megriviruses (family Picornaviridae): long 3 untranslated regions with a potential second open reading frame and evidence for possible recombination. J. Virol. 88: 6434-6443.

Farkas, T., Fey, B., Hargitt, E. 3rd., Parcells, M., Ladman, B., Murgia, M. and Saif, Y. (2012). Molecular detection of novel picornaviruses in chickens and turkeys. Virus Genes 44: 262-272.

Kim, H., Yoon, S., Lee, H. and Kwon, Y. (2015). Identification of a picornavirus from chickens with transmissible viral proventriculitis using metagenomic analysis. Arch. Virol. 160: 701709. [Epub ahead of print 2015 Jan 7]

Kim, H., Choi, J., Lee, H. and Kwon, Y. Viral metagenomic analysis of the feces of chickens with runting-stunting syndrome. Unpublished.

Lau, S.K., Woo, P.C., Yip, C.C., Li, K.S., Fan, R.Y., Bai, R., Huang, Y., Chan, K.H. and Yuen, K.Y. (2014). Chickens host diverse picornaviruses originated from potential interspecies transmission with recombination. J. Gen. Virol. 95: 1929-1944.

Lima DA, Cibulski SP, Tochetto C, Varela APM, Finkler F, Teixeira TF, Loiko MR, Cerva C, Junqueira DM, Mayer FQ, Roehe PM. The intestinal virome of malabsorption syndrome-affected and unaffected broilers through shotgun metagenomics. Virus Res. 2018 Dec 10. pii: S0168-1702(18)30482-9. doi: 10.1016/j.virusres.2018.12.005. [Epub ahead of print] PubMed PMID: 30543873.
 

 
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