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 Gallivirus A seqs

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Unassigned
  Genus: Gallivirus

Species: Gallivirus A

Gallivirus A1  
5' UTR L VP0 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Gallivirus A2  
5' UTR L VP0 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
     

(White areas indicate genes which haven't yet been sequenced completely; grey areas are where only partial sequences exist)

Virus Strain Region Length Accession No. Reference Comments

Gallivirus A1 (GV-A1)

GV-A1 chicken/USA/CHK1/2010 2C(p)-3'UTR 3219 JF424824 Farkas et al., 2012 Gallus gallus domesticus
GV-A1 chicken/USA/CHK165/2010 3D(p)+3'UTR 1019 JF424825 Farkas et al., 2012 Gallus gallus domesticus
GV-A1 chicken/USA/CHK168/2010 3D(p)+3'UTR 1019 JF424826 Farkas et al., 2012 Gallus gallus domesticus
GV-A1 chicken/USA/CHK175/2010 3D(p)+3'UTR 1017 JF424827 Farkas et al., 2012 Gallus gallus domesticus
GV-A1 turkey/USA/TRK24/2010 3D(p)-3'UTR 1020 JF424828 Farkas et al., 2012 Meleagris gallopavo
GV-A1 turkey/USA/TRK90/2010 3D(p)+3'UTR 1020 JF424829 Farkas et al., 2012 Meleagris gallopavo
GV-A1 turkey/USA/TRK91/2010 3D(p)+3'UTR 1018 JF424830 Farkas et al., 2012 Meleagris gallopavo
GV-A1 turkey/HUN/M176/2011 CG 8496 JQ691613 Boros et al., 2012 Meleagris gallopavo
GV-A1 turkey/HUN/PP3/2011 VP3(p)+VP1+2A(p) 912 JQ691614 Boros et al., 2012 Meleagris gallopavo
GV-A1 turkey/HUN/B177/2011 VP3(p)+VP1+2A(p) 904 JQ691615 Boros et al., 2012 Meleagris gallopavo
             

Gallivirus A2 (GV-A2) (aka chicken gallivirus 1; ChGV-1)

ChGV-1 ch/518C/Hong Kong/2010 CG 8432 KF979337 Lau et al., 2014 Gallus gallus domesticus
ChGV-1 ch/Pf-CHK1/HUN/2013 CG 8506 KT880666 Boros et al., 2016 Gallus gallus domesticus
ChGV ch/RS/BR/2015/2R 3C to 3'UTR 2226 MG846488 Lima et al., 2018 Gallus gallus domesticus
             

Gallivirus?

? ch/NLD/2019/V_M_033_picorna_2 CG(p) 7154 MW684795 de Rooij et al., unpub. Gallus gallus domesticus
             
CG = complete genome
(p) = partial gene sequence

References

Boros, A., Nemes, C., Pankovics, P., Kapusinszky, B., Delwart, E. and Reuter, G. (2012). Identification and complete genome characterization of a novel picornavirus in turkey (Meleagris gallopavo). J Gen Virol. 93: 2171-2182. Epub 2012 Aug 8.

Boros, A., Pankovics, P., Adonyi, A., Fenyvesi, H., Day, J.M., Phan, T.G., Delwart, E. and Reuter, G. (2016). A diarrheic chicken simultaneously co-infected with multiple picornaviruses: Complete genome analysis of avian picornaviruses representing up to six genera. Virology 489: 63-74. Epub 2015 Dec 18.

Farkas, T., Fey, B., Hargitt 3rd, E., Parcells, M., Ladman, B., Murgia, M. and Saif, Y. (2012). Molecular detection of novel picornaviruses in chickens and turkeys. Virus Genes 44: 262-272. Epub 2011 Dec 13.

Lau, S.K., Woo, P.C., Yip, C.C., Li, K.S., Fan, R.Y., Bai, R., Huang, Y., Chan, K.H. and Yuen, K.Y. (2014). Chickens host diverse picornaviruses originated from potential interspecies transmission with recombination. J. Gen. Virol. 95: 1929-1944.

Lima DA, Cibulski SP, Tochetto C, Varela APM, Finkler F, Teixeira TF, Loiko MR, Cerva C, Junqueira DM, Mayer FQ, Roehe PM. The intestinal virome of malabsorption syndrome-affected and unaffected broilers through shotgun metagenomics. Virus Res. 2018 Dec 10. pii: S0168-1702(18)30482-9. doi: 10.1016/j.virusres.2018.12.005. [Epub ahead of print] PubMed PMID: 30543873.