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Genus: Kobuvirus
Species: Aichivirus A
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Type:
aichivirus
A9
(AiV-A9) |
|
| 5' UTR |
L |
VP0 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
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|
|
|
|
(White areas indicate genes which
haven't yet been sequenced
completely; grey areas are where
only partial sequences exist)
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| |
| Virus |
Strain |
Region |
Length |
Accession
no. |
Reference |
Comments |
Aichivirus A9 (AiV-A9) aka Norway rat kobuvirus
|
|
AiV-A9 |
rat/Wencheng-
Rt386-2/China/2012 |
CG(p) |
8295 |
MF352432 |
Guo & Zhang,
unpub. |
Rattus
tanezumi |
|
NrKoV-1 |
rat/NYC-E18/USA/2012 |
3D(p) |
924 |
KJ950909 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-E18b/USA/2012 |
VP1+ |
1276 |
KJ950942 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-A11/USA/2013 |
VP1(p) |
309 |
KJ950943 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-A15a/USA/2013 |
VP1(p) |
309 |
KJ950944 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-A15b/USA/2012 |
VP1+ |
1494 |
KJ950945 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-A16/USA/2013 |
VP1(p) |
310 |
KJ950946 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-A20/USA/2013 |
VP1(p) |
310 |
KJ950947 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-A22/USA/2013 |
VP1(p) |
310 |
KJ950948 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-A23/USA/2013 |
VP1(p) |
310 |
KJ950949 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-A5/USA/2013 |
VP1(p) |
310 |
KJ950950 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-A9/USA/2013 |
VP1(p) |
310 |
KJ950951 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-B1/USA/2013 |
VP1(p) |
310 |
KJ950952 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-B10/USA/2013 |
VP1(p) |
310 |
KJ950953 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-B12/USA/2013 |
VP1(p) |
309 |
KJ950954 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-B5/USA/2013 |
VP1(p) |
309 |
KJ950955 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-B7/USA/2013 |
VP1(p) |
310 |
KJ950956 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-B8/USA/2013 |
VP1(p) |
309 |
KJ950957 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-B9/USA/2013 |
VP1+ |
1568 |
KJ950958 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-C1/USA/2013 |
VP1(p) |
310 |
KJ950959 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-C14/USA/2013 |
VP1(p) |
310 |
KJ950960 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-D14/USA/2013 |
VP1(p) |
310 |
KJ950961 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-D19/USA/2013 |
VP1(p) |
308 |
KJ950962 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-D21/USA/2013 |
VP1(p) |
310 |
KJ950963 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-D22/USA/2013 |
VP1(p) |
310 |
KJ950964 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-D24/USA/2013 |
VP1(p) |
310 |
KJ950965 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-D26/USA/2013 |
VP1(p) |
310 |
KJ950966 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-D3/USA/2013 |
VP1(p) |
310 |
KJ950967 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-D5/USA/2013 |
VP1(p) |
310 |
KJ950968 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat/NYC-E27/USA/2013 |
VP1(p) |
310 |
KJ950969 |
Firth et al.,
2014 |
Rattus norvegicus |
|
NrKoV-1 |
rat08/rAiA/HUN/2018 |
CG |
8268 |
MN116647 |
Boros et al.,
2019 |
Rattus norvegicus |
|
NrKoV-1 |
rat02/rAiA/HUN/2017 |
VP1 |
803 |
MN116639 |
Boros et al.,
2019 |
Rattus norvegicus |
|
NrKoV-1 |
rat05/rAiA/HUN/2017 |
VP1 |
803 |
MN116640 |
Boros et al.,
2019 |
Rattus norvegicus |
|
NrKoV-1 |
rat06/rAiA/HUN/2017 |
VP1 |
803 |
MN116641 |
Boros et al.,
2019 |
Rattus norvegicus |
|
NrKoV-1 |
rat09/rAiA/HUN/2018 |
VP1 |
803 |
MN116642 |
Boros et al.,
2019 |
Rattus norvegicus |
|
|
rat/MM33/China/2017 |
CG(p) |
7736 |
MN648600 |
You et al.,
2020 |
Rattus norvegicus |
|
|
rat/GZ85/China/2017 |
CG(p) |
7750 |
MN648601 |
You et al.,
2020 |
Rattus norvegicus |
| |
|
|
|
|
|
|
| (p),
partial, sequence not complete |
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References
Boros Á, Orlovácz K, Pankovics P, Szekeres S, Földvári G,
Fahsbender E, Delwart E, Reuter G. Diverse picornaviruses are
prevalent among free-living and laboratory rats (Rattus norvegicus)
in Hungary and can cause disseminated infections. Infect Genet Evol.
2019 Aug 1;75:103988. doi: 10.1016/j.meegid.2019.103988. [Epub ahead
of print] PubMed PMID: 31377399.
Firth, C., Bhat, M., Firth, M.A., Williams, S.H., Frye,
M.J., Simmonds, P., Conte, J.M., Ng, J., Garcia, J., Bhuva, N.P.,
Lee, B., Che, X., Quan, P.L. and Lipkin, W.I. (2014). Detection of
zoonotic pathogens and characterization of novel viruses carried by
commensal Rattus norvegicus in New York City. MBio 5(5).
pii: e01933-14.
You FF, Zhang MY, He H, He WQ, Li YZ, Chen Q. Kobuviruses carried by
Rattus norvegicus in Guangdong, China. BMC Microbiol. 2020 Apr
15;20(1):94. doi: 10.1186/s12866-020-01767-x. PMID: 32295529; PMCID:
PMC7161169.
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