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 Porcine sapelovirus 1 seqs

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Unassigned
  Genus: Sapelovirus

Species:  Sapelovirus A (formerly Porcine sapelovirus and before that Porcine enterovirus A in the Enterovirus genus)

Serotype: porcine sapelovirus 1 (PSV-1)
[formerly porcine enterovirus 8 (PEV-8)]
 
5' UTR L VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
     

(White areas indicate genes which haven't yet been sequenced completely;
grey areas are where only partial sequences exist)

Virus Strain

Region

Length

Accession No.

Reference Comments

Porcine sapelovirus 1 (PSV-1)

PSV-1 V13* (England/57) 3D(p)+3'NCR 1404 AJ001391 J. Peng, F. Lin, R.P. Kitching and N.J. Knowles, unpub.  
VP2(p) 162 AB049559 Kaku et al., 2001  
CG(p) 7491 AF406813 Krumbholz et al., 2002 approx. 47 nt missing
from 5' end
PSV-1 A1 3D(p) 198 N/A F. Lin and N.J. Knowles, unpub.  
PSV-1 MV 2-76 (Malta/76) 3D(p) 414 N/A F. Lin and N.J. Knowles, unpub.  
PSV-1 SF16 (J4) VP2(p) 161 AB049560 Kaku et al., 2001  
3D(p) 865 AB049542 Kaku et al., 2001  
PSV-1 IP1 (J6) VP2(p) 161 AB049561 Kaku et al., 2001  
3D(p) 865 AB049543 Kaku et al., 2001  
PSV-1 Po 5116 5' UTR(p)+L+P1+2A+2B(p) 3969 AY392538 Zell et al., unpublished  
PSV-1 16-S-X 5' UTR(p)+L+P1+2A+2B(p) 3699 AY392543 Zell et al., unpublished  
PSV-1 26-T-XII 5' UTR(p)+L+P1+2A+2B(p) 3688 AY392544 Zell et al., unpublished  
PSV-1 38-V-II 5' UTR(p)+L+VP4(p) 751 AY392545 Zell et al., unpublished  
PSV-1 Sek 1562/98 5' UTR(p)+L+P1+2A+2B(p) 3968 AY392556 Zell et al., unpublished  
PSV-1 sw/IT/144/1992 5' UTR(p) 152 AM260995 La Rosa et al., 2006  
PSV-1 sw/IT/145/1992 5' UTR(p) 152 AM260996 La Rosa et al., 2006  
PSV-1 sw/IT/287/1995 5' UTR(p) 152 AM260997 La Rosa et al., 2006  
PSV-1 sw/IT/288/1995 5' UTR(p) 153 AM260998 La Rosa et al., 2006  
PSV-1 sw/IT/292/1995 5' UTR(p) 152 AM260999 La Rosa et al., 2006  
PSV-1 sw/IT/293/1995 5' UTR(p) 152 AM261000 La Rosa et al., 2006  
PSV-1 sw/IT/294/1995 5' UTR(p) 152 AM261001 La Rosa et al., 2006  
PSV-1 sw/IT/296/1996 5' UTR(p) 152 AM261002 La Rosa et al., 2006
PSV-1 sw/IT/303/1996 5' UTR(p) 152 AM261003 La Rosa et al., 2006  
PSV-1 sw/IT/307/1997 5' UTR(p) 152 AM261004 La Rosa et al., 2006  
PSV-1 sw/IT/309/1997 5' UTR(p) 152 AM261005 La Rosa et al., 2006  
PSV-1 sw/IT/310/1997 5' UTR(p) 152 AM261006 La Rosa et al., 2006  
PSV-1 sw/IT/311/1997 5' UTR(p) 152 AM261007 La Rosa et al., 2006  
PSV-1 sw/IT/316/1997 5' UTR(p) 152 AM261008 La Rosa et al., 2006  
PSV-1 Gifu virus (Gunma, Japan;
 wild boar)
VP1 855 AB619806 Abe et al., 2011  
3A 300 AB609605 Abe et al., 2011  
PSV-1 sw/csh/China/2009 CG(p) 7502 HQ875059 Lan et al., 2011 approx. 47 nt missing
from 5' end
PSV-1 sw/YC2011/China/2011 CG(p) 7540 JX286666 Chen et al., 2012 approx. 25 nt missing
from 5' end
PSV-1 sw/JD2011/China/2011 CG(p) 7572 KF539414 Chen et al., unpub. approx. 33 nt missing
from 5' end
PSV-1 BRA/UEL-WB20/13 (wild boar) 5'UTR(p) 211 KJ187770 Donin et al., 2013  
PSV-1 sw/QT2013/China/2013 CG(p) 7532 KJ463384 Chen et al., unpub. approx. 88 nt missing
from 5' end
PSV-? sw/G5/UK/2008 3D(p) 802 JN860928 Schock et al., 2014  
PSV-1 sw/KS04105/South Korea/2004 CG 7542 KJ821019 Son et al., 2014  
PSV-1 sw/KS05151/South Korea/2005 CG 7566 KJ821020 Son et al., 2014  
PSV-1 sw/KS055217/South Korea/2005 CG 7542 KJ821021 Son et al., 2014  
PSV-1 sw/HuN1/China/2015 pp-coding 6996 KX354740 Yang et al., 2017  
PSV-1 sw/HuN2/China/2015 pp-coding 6996 KX354741 Yang et al., 2017  
PSV-1 sw/HuN3/China/2015 pp-coding 6996 KX354742 Yang et al., 2017  
PSV-1 sw/HuN4/China/2015 pp-coding 6999 KX354743 Yang et al., 2017  
PSV-1 sw/USA/IA33375/2015 CG 7565 KX574284 Chen et al., unpub.  
PSV-1 sw/ISU-SHIC/NC/2016 CG(p) 7389 KX810827 Arruda et al., 2017  
PSV-1 sw/C-6/IND/2015 CG(p) 7491 KY053835 Ray et al., 2017  
PSV-1 sw/Jpsv1315/Japan/2009 CG(p) 7569 LC326555 Bai et al., 2017  
PSV-1 sw/Jpsv447/Japan/2009 CG(p) 7582 LC326556 Bai et al., 2017  
PSV-1 sw/GER/L00798-K11_14-02/2014 CG(p) 7499 LT900497 Pohlmann, unpub.  
PSV-1 sw/HuN5/China/2016 CG(p) 7218 MF440633 Yang et al., 2017  
PSV-1 sw/HuN6/China/2016 CG(p) 7210 MF440634 Yang et al., 2017  
PSV-1 sw/HuN7/China/2016 CG(p) 7264 MF440635 Yang et al., 2017  
PSV-1 sw/HuN8/China/2016 CG(p) 7222 MF440636 Yang et al., 2017  
PSV-1 sw/HuN9/China/2016 CG(p) 7245 MF440637 Yang et al., 2017  
PSV-1 sw/HuN10/China/2016 CG(p) 7219 MF440638 Yang et al., 2017  
PSV-1 sw/HuN11/China/2016 CG(p) 7231 MF440639 Yang et al., 2017  
PSV-1 sw/HuN12/China/2016 CG(p) 7227 MF440640 Yang et al., 2017  
PSV-1 sw/HuN13/China/2016 CG(p) 7254 MF440641 Yang et al., 2017  
PSV-1 sw/HuN14/China/2016 CG(p) 7152 MF440642 Yang et al., 2017  
PSV-1 sw/HuN15/China/2016 CG(p) 7221 MF440643 Yang et al., 2017  
PSV-1 sw/HuN16/China/2016 CG(p) 7227 MF440644 Yang et al., 2017  
PSV-1 sw/HuN17/China/2016 CG(p) 7258 MF440645 Yang et al., 2017  
PSV-1 sw/HuN18/China/2016 CG(p) 7225 MF440646 Yang et al., 2017  
PSV-1 sw/HuN19/China/2017 CG(p) 7253 MF440647 Yang et al., 2017  
PSV-1 sw/HuN20/China/2017 CG(p) 7223 MF440648 Yang et al., 2017  
PSV-1 sw/HuN21/China/2017 CG(p) 7230 MF440649 Yang et al., 2017  
PSV-1 sw/HuN22/China/2017 CG(p) 7229 MF440650 Yang et al., 2017  
PSV-1 sw/HuN23/China/2017 CG(p) 7221 MF440651 Yang et al., 2017  
PSV-1 sw/HuN24/China/2017 CG(p) 7221 MF440652 Yang et al., 2017  
PSV-1 sw/HuN25/China/2014 CG(p) 7254 MF440653 Yang et al., 2017  
PSV-1 sw/HuN26/China/2017 CG(p) 7266 MF440654 Yang et al., 2017  
PSV-1 sw/HuN27/China/2017 CG(p) 7263 MF440655 Yang et al., 2017  
PSV-1 sw/HuN28/China/2017 CG(p) 7275 MF440656 Yang et al., 2017  
PSV-1 sw/HuN29/China/2017 CG(p) 7220 MF440657 Yang et al., 2017  
PSV-1 sw/HuN30/China/2017 CG(p) 7259 MF440658 Yang et al., 2017  
PSV-1 sw/HuN31/China/2017 CG(p) 7232 MF440659 Yang et al., 2017  
PSV-1 sw/HuN32/China/2017 CG(p) 7227 MF440660 Yang et al., 2017  
PSV-1 sw/HuN33/China/2014 CG(p) 7222 MF440661 Yang et al., 2017  
PSV-1 sw/OPY-1-Corsica-2017 CG(p) 7532 MH513612 Piorkowski et al., 2018  
PSV-1 sw/PSV-A2/China/2016 CG 7564 MG732813 Gu et al., unpub.  
PSV-1 sw/PSV-C/China/2016 CG 7564 MG732814 Gu et al., unpub.  
PSV-1 sw/DIAPD5469-10/Italy/2015 CG(p) 7564 MK497044 Tassoni et al., unpub.  
PSV-1 sw/JXXY-a2/China/2017 CG 7584 MH626634 Li et al., 2019  
PSV-1 sw/JXXY-C/China/2017 CG 7575 MH626635 Li et al., 2019  
PSV-1 sw/XTND/2018/Vietnam CG(p) 7537 LC493088 Dang et al., 2019  
PSV-1 sw/PSV-20-V/Zambia/2018 CG(p) 7495 LC508226 Harima et al., 2020  
PSV-1 sw/PSV-21-V/Zambia/2018 CG(p) 7458 LC508227 Harima et al., 2020  
PSV-1 sw/PSV-21-B/Zambia/2018 CG(p) 7468 LC508228 Harima et al., 2020  
PSV-1 sw/PSV-22-B/Zambia/2018 CG(p) 7468 LC508229 Harima et al., 2020
PSV-1 sw/PSV-23-V/Zambia/2018 CG(p) 7462 LC508230 Harima et al., 2020  
PSV-1 sw/PSV-23-B/Zambia/2018 CG(p) 7462 LC508231 Harima et al., 2020  
PSV-1 sw/PSV-26-B/Zambia/2018 CG(p) 7493 LC508232 Harima et al., 2020  
PSV-1 sw/PSV-46-V/Zambia/2018 CG(p) 7469 LC508233 Harima et al., 2020  
PSV-1 sw/PSV-46-B/Zambia/2018 CG(p) 7498 LC508234 Harima et al., 2020  
PSV-1 sw/75BO2012/Italy CG(p) 7560 MN836683 Chelli et al., 2020  
PSV-1 sw/SHCM2019/China CG(p) 7567 MN685785 Liu et al., unpub.  
             

Porcine sapelovirus 2 (PSV-2) candidate new type

PSV-2 sw/SZ1M-F/PSV/HUN/2013 CG 7534 MN807752 Boros et al., 2020  
PSV-2 sw/EF9-F/PSV/HUN/2016 VP1 854 MN807773 Boros et al., 2020  
             
CG, complete genome
(p), partial gene sequence
*, prototype strain

References

Abe, M., Ito, N., Sakai, K., Kaku, Y., Oba, M., Nishimura, M., Kurane, I., Saijo, M., Morikawa, S., Sugiyama, M. and Mizutani, T. (2011). A novel sapelovirus-like virus isolation from wild boar. Virus Genes 43: 243-248. Epub 2011 Jun 4.

Arruda, P.H., Arruda, B.L., Schwartz, K.J., Vannucci, F., Resende, T., Rovira, A., Sundberg, P., Nietfeld, J. and Hause, B.M. (2017). Detection of a novel sapelovirus in central nervous tissue of pigs with polioencephalomyelitis in the USA. Transbound. Emerg. Dis. 2017 Feb 3. doi: 10.1111/tbed.12621. [Epub ahead of print]

Bai H, Liu J, Fang L, Kataoka M, Takeda N, Wakita T, Li TC. Characterization of porcine sapelovirus isolated from Japanese swine with PLC/PRF/5 cells. Transbound Emerg Dis. 2017 Dec 28. doi: 10.1111/tbed.12796. [Epub ahead of print] PubMed PMID: 29285901.

Boros Á, László Z, Pankovics P, Marosi A, Albert M, Cságola A, Bíró H, Fahsbender E, Delwart E, Reuter G. High prevalence, genetic diversity and a potentially novel genotype of Sapelovirus A (Picornaviridae) in enteric and respiratory samples in Hungarian swine farms. J Gen Virol. 2020 Apr 7. doi: 10.1099/jgv.0.001410. [Epub ahead of print] PubMed PMID: 32255421.

Chelli, E., De Sabato, L., Vaccari, G., Ostanello, F., & Di Bartolo, I. (2020). Detection and Characterization of porcine sapelovirus in Italian Pig Farms. Animals 10(6), 966. https://doi.org/10.3390/ani10060966.

Chen, J., Chen, F., Zhou, Q., Li, W., Song, Y., Pan, Y., Zhang, X., Xue, C., Bi, Y. and Caoa, Y. (2012). Complete genome sequence of a novel porcine sapelovirus strain YC2011 isolated from piglets with diarrhea. J. Virol. 86: 10898.

Dang HV, Kato T, Nishi T, Tran HT, Miyazawa K, Kokuho T. Complete Genome Sequencing of a Novel Strain of Sapelovirus A Circulating in Vietnam. Microbiol Resour Announc. 2019 Sep 12;8(37). pii: e00959-19. doi: 10.1128/MRA.00959-19. PubMed PMID: 31515349.

Donin, D.G., de Arruda Leme, R., Alfieri, A.F., Alberton, G.C. and Alfieri, A.A. (2013). First report of Porcine teschovirus (PTV), Porcine Porcine sapelovirus (PSV) and Enterovirus G (EV-G) in pig herds of Brazil. Trop. Anim. Health Prod., in press.

Harima H, Kajihara M, Simulundu E, Bwalya E, Qiu Y, Isono M, Okuya K, Gonzalez G, Yamagishi J, Hang'ombe BM, Sawa H, Mweene AS, Takada A. Genetic and Biological Diversity of Porcine Sapeloviruses Prevailing in Zambia. Viruses. 2020 Feb 5;12(2). pii: E180. doi: 10.3390/v12020180. PubMed PMID: 32033383; PubMed Central PMCID: PMC7077239.

Kaku, Y., Sarai, A. and Murakami, Y. (2001). Genetic reclassification of porcine enteroviruses. J. Gen. Virol. 82: 417-424.

Krumbholz, A., Dauber, M., Henke, A., Birch-Hirschfeld, E., Knowles, N.J., Stelzner, A. and Zell, R. (2002). Sequencing of porcine enterovirus groups II and III reveals unique features of both virus groups. J. Virol. 76: 5813-5821.

Lan, D., Ji, W., Yang, S., Cui, L., Yang, Z., Yuan, C. and Hua, X. (2011). Isolation and characterization of the first Chinese porcine sapelovirus strain. Arch Virol. 156: 1567-1574. Epub 2011 May 27.

La Rosa, G., Muscillo, M., Di Grazia, A., Fontana, S., Iaconelli, M. and Tollis, M. (2006). Validation of rt-PCR assays for molecular characterization of porcine teschoviruses and enteroviruses. J. Vet. Med. B Infect. Dis. Vet. Public Health 53: 257-265.

Li Y, Du L, Jin T, Cheng Y, Zhang X, Jiao S, Huang T, Zhang Y, Yan Y, Gu J, Zhou J. Characterization and epidemiological survey of porcine sapelovirus in China. Vet Microbiol. 2019 May;232:13-21. doi: 10.1016/j.vetmic.2019.02.017. Epub 2019 Mar 29. PubMed PMID: 31030837.

Piorkowski G, Capai L, Falchi A, Casabianca F, Maestrini O, Gallian P, Barthélémy K, Py O, Charrel R, de Lamballerie X. 2018. First identification and genomic characterization of a porcine sapelovirus from Corsica, France, 2017. Microbiol Resour Announc 7:e01049-18.

Prodělalová, J. (2012). The survey of porcine teschoviruses, sapeloviruses and enteroviruses B infecting domestic pigs and wild boars in the Czech Republic between 2005 and 2011. Infect Genet Evol. 12: 1447-1451. Epub 2012 May 3.

Ray, P.K., Desingu, P.A., Kumari, S., John, J.K., Sethi, M., Sharma, G.K., Pattnaik, B., Singh, R.K. and Saikumar, G. (2017). Porcine sapelovirus among diarrhoeic piglets in India. Transbound. Emerg. Dis. 2017 Feb 27. doi: 10.1111/tbed.12628. [Epub ahead of print]

Schock, A., Gurrala, R., Fuller, H., Mvb, L.F., Dauber, M., Martelli, F., Scholes, S., Roberts, L., Steinbach, F. and Dastjerdi, A. (2014). Investigation into an outbreak of encephalomyelitis caused by a neuroinvasive porcine sapelovirus in the United Kingdom, Vet. Microbiol. 172: 381-389.

Son, K.Y., Kim, D.S., Kwon, J., Choi, J.S., Kang, M.I., Belsham, G.J. and Cho, K.O. (2014). Full-length genomic analysis of korean porcine sapelovirus strains. PLoS One. 9(9):e107860.

Yang, T., Li, R., Peng, W., Ge, M., Luo, B., Qu, T. and Yu, X. (2017). First isolation and genetic characteristics of porcine sapeloviruses in Hunan, China. Arch. Virol. 162: 1589-1597. doi: 10.1007/s00705-017-3264-x. Epub 2017 Feb 17. PubMed PMID: 28213873.

Zell, R., Krumbholz, A., Henke, A., Wurm, Rd. and Dauber, M. Molecular diversity of porcine and simian picornaviruses. Unpublished.

 
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